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@JCVenterInstitute

J. Craig Venter Institute

Popular repositories

  1. NSForest NSForest Public

    A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

    HTML 50 16

  2. FRmatch FRmatch Public

    Cell type matching in single-cell RNA-sequencing data using FR-Match

    R 19 2

  3. VIGOR4 VIGOR4 Public

    VIGOR4

    Java 17 11

  4. PanGenomePipeline PanGenomePipeline Public

    PanGenomePipeline

    Perl 15 9

  5. OMeta-Public OMeta-Public Public

    OMeta-Public

    JavaScript 8 9

  6. PanACEA PanACEA Public

    PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.

    Perl 7 4

Repositories

Showing 10 of 30 repositories
  • CAMRA Public

    CAMRA is a DS-I Africa research hub focused on analyzing clinical and molecular data related to antimicrobial resistance (AMR) in bacterial infections in Nigeria and Rwanda with the aim of translating genomics of AMR to sensitive, rapid diagnostics, and effective therapeutics.

    WDL 0 0 0 0 Updated Jun 10, 2024
  • celligrate Public

    Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data

    HTML 3 MIT 0 1 0 Updated Jun 7, 2024
  • NSForest Public

    A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

    HTML 50 MIT 16 4 0 Updated May 30, 2024
  • Jillion Public

    Jillion

    Java 2 LGPL-2.1 4 0 0 Updated May 29, 2024
  • HSPW-V3 Public
    JavaScript 0 0 6 0 Updated May 22, 2024
  • PanGenomePipeline Public

    PanGenomePipeline

    Perl 15 GPL-2.0 9 7 0 Updated Apr 10, 2024
  • PanACEA Public

    PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.

    Perl 7 GPL-2.0 4 1 0 Updated Mar 20, 2024
  • GGRaSP Public
    R 7 GPL-2.0 5 1 1 Updated Feb 15, 2024
  • LOCUST Public

    LOCUST (LOcus CUstom Sequence Typer) is a custom sequence locus typer tool for classifying microbial genomes. It provides a fully automated opportunity to customize the classification of genome-wide nucleotide variant data most relevant to biological research.

    Perl 1 GPL-2.0 2 1 0 Updated Jan 18, 2024
  • Jupyter Notebook 6 MIT 2 0 0 Updated Dec 7, 2023

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