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InfOmics

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  1. RI RI Public

    RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints.

    C++ 18 10

  2. PanDelos PanDelos Public

    A dictionary-based method for pan-genomic contents discovery.

    Java 3 3

  3. GRAFIMO GRAFIMO Public

    Graph-based Finding of Individual Motif Occurrences

    Python 5

  4. APPAGATO APPAGATO Public

    an APproximate PArallel and stochastic GrAph querying TOol for biological networks

    Cuda

  5. cuRnet cuRnet Public

    An R package for graph traversing on GPU.

    Cuda 5 4

  6. LErNet LErNet Public

    LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis

    R 1

Repositories

Showing 10 of 62 repositories
  • InfOmics Public

    InfOmics website

    InfOmics/InfOmics’s past year of commit activity
    SCSS 1 2 0 0 Updated Jun 14, 2024
  • CRISPRme Public Forked from pinellolab/CRISPRme
    InfOmics/CRISPRme’s past year of commit activity
    Python 2 8 0 0 Updated Feb 28, 2024
  • PanDelos Public

    A dictionary-based method for pan-genomic contents discovery.

    InfOmics/PanDelos’s past year of commit activity
    Java 3 MIT 3 0 0 Updated Nov 24, 2023
  • ADAIR-Project Public

    This repository contains the scripts used within ADAIR, an EU Joint Programme - Neurodegenerative Disease Research (JPND) project. This research was supported by the ADAIR project (grant #JPND2019-466-037)

    InfOmics/ADAIR-Project’s past year of commit activity
    R 0 0 0 0 Updated Oct 13, 2023
  • EasyCircR Public
    InfOmics/EasyCircR’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Sep 5, 2023
  • APDB Public Forked from evaviesi/APDB
    InfOmics/APDB’s past year of commit activity
    HTML 0 MIT 2 0 0 Updated May 12, 2023
  • Esearch3D Public
    InfOmics/Esearch3D’s past year of commit activity
    R 3 MIT 2 0 0 Updated Apr 19, 2023
  • DiGAS Public

    A novel computational model for identifying genomic elements (from single exon to entire genomic regions) that are linked to a given phenotypic condition (i.e. a disease) investigating for single nucleotide polymorphisms (SNP).

    InfOmics/DiGAS’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 15, 2023
  • PanDelos-frags Public

    A version of PanDelos that discovers pangenomic content in fragmented genomes

    InfOmics/PanDelos-frags’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Mar 7, 2023
  • PanDelos-frags-SUPP Public

    This repository contains scripts to run the analyses performed in the methodological paper PanDelos-frags (tool available at InfOmics/PanDelos-frags)

    InfOmics/PanDelos-frags-SUPP’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 7, 2023
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