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@GooglingTheCancerGenome

Googling the cancer genome

Software repositories of the Netherlands eScience Center project: Googling the cancer genome

Pinned

  1. sv-callers sv-callers Public

    Snakemake-based workflow for detecting structural variants in genomic data

    Python 71 34

  2. sv-gen sv-gen Public

    Snakemake-based workflow for generating artificial genomes with structural variants

    Python 6 1

  3. sv-channels sv-channels Public

    Deep learning-based structural variant filtering method

    Python 31 5

Repositories

Showing 10 of 10 repositories
  • docker-images Public

    Docker images for CI testing

    Dockerfile 0 Apache-2.0 0 0 0 Updated Feb 29, 2024
  • sv-callers Public

    Snakemake-based workflow for detecting structural variants in genomic data

    Python 71 Apache-2.0 34 7 0 Updated Feb 13, 2024
  • sv-channels Public

    Deep learning-based structural variant filtering method

    Python 31 Apache-2.0 5 21 2 Updated Nov 19, 2023
  • sv-gen Public

    Snakemake-based workflow for generating artificial genomes with structural variants

    Python 6 Apache-2.0 1 1 0 Updated Jan 18, 2023
  • notebooks Public

    This repo mirrors the Jupyter Notebooks archived at Zenodo

    Jupyter Notebook 1 Apache-2.0 0 1 0 Updated Aug 26, 2020
  • breakpoint-pairs Public

    Minor research internship of Sarah Mehrem.

    Python 0 Apache-2.0 0 0 0 Updated Oct 24, 2019
  • bamsurgeon Public Forked from adamewing/bamsurgeon

    tools for adding mutations to existing .bam files, used for testing mutation callers

    Python 0 MIT 85 0 0 Updated Feb 27, 2019
  • sv-report Public
    0 Apache-2.0 0 0 0 Updated Jan 26, 2018
  • hsv-ld Public

    Linked Data Platform for Structural Variants in Human Cancer Genomes

    Shell 0 Apache-2.0 2 0 0 Updated Dec 1, 2017
  • ga-integr8 Public

    Genome Annotation Data Integration

    Python 0 0 2 0 Updated Nov 29, 2017

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