GoogleCloudPlatform · jrossthomson · Aug 4, 2020 · Aug 4, 2020 · Aug 5, 2020 · Aug 6, 2020
diff --git a/stored_procedures/t_test.sql b/stored_procedures/t_test.sql
@@ -0,0 +1,224 @@
+/*
+ * Copyright 2021 Google LLC
- * Copyright 2021 Google LLC
+ * Copyright 2022 Google LLC
- * Copyright 2021 Google LLC
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- @param STRING pop1_table table name (or subquery) that contains the first population
+-- @param STRING pop1_variable name of the measurement column in our first table
+-- @param STRING pop2_table table name (or subquery) that contains the second population
+-- @param STRING pop2_variable name of the measurement column in our second table
+-- @return STRUCT<t_value FLOAT64, dof FLOAT64, p_value FLOAT64>
+
+CREATE OR REPLACE PROCEDURE bqutil.procedure.t_test(pop1_table STRING, pop1_variable STRING, pop2_table STRING, pop2_variable STRING, OUT result STRUCT<t_value FLOAT64, dof FLOAT64, p_value FLOAT64> )
+BEGIN
+EXECUTE IMMEDIATE """
+ WITH pop1 AS (
+ SELECT `""" || pop1_variable || """` AS value
+ FROM """ || pop1_table ||"""
+ ), pop2 as (
+ SELECT `""" || pop2_variable || """` AS value
+ FROM """ || pop2_table || """
+ )
+ SELECT STRUCT(
+ ABS(x1 - x2) / Sqrt((st1 * st1 / n1) + (st2 * st2 / n2)) AS t_value,
+ n1 + n2 - 2 AS dof,
+ bqutil.fn.pvalue(ABS(x1 - x2) / Sqrt((st1 * st1 / n1) + (st2 * st2 / n2)), n1 + n2 - 2) AS p_value
+ )
+ FROM (
+ SELECT
+ AVG(value) x1,
+ STDDEV(value) st1,
+ COUNT(value) AS n1
+ FROM pop1
+ )
+ CROSS JOIN
+ (
+ SELECT
+ AVG(value) x2,
+ STDDEV(value) st2,
+ COUNT(value) AS n2
+ FROM pop2
+ )
+""" INTO result;
+END;
+
+-- a unit test of t_test_paired
+BEGIN
+ DECLARE result STRUCT<t_value FLOAT64, dof FLOAT64, p_value FLOAT64>;
+ CREATE TEMP TABLE iris (sepal_length FLOAT64, sepal_width FLOAT64, petal_length FLOAT64, petal_width FLOAT64, species STRING)
+ AS
+ SELECT 5.1 AS sepal_length,
+ 3.5 AS sepal_width,
+ 1.4 AS petal_length,
+ 0.2 AS petal_width,
+ 'setosa' AS species
+ UNION ALL SELECT 4.9,3.0,1.4,0.2,'setosa'
+ UNION ALL SELECT 4.7,3.2,1.3,0.2,'setosa'
+ UNION ALL SELECT 4.6,3.1,1.5,0.2,'setosa'
+ UNION ALL SELECT 5.0,3.6,1.4,0.2,'setosa'
+ UNION ALL SELECT 5.4,3.9,1.7,0.4,'setosa'
+ UNION ALL SELECT 4.6,3.4,1.4,0.3,'setosa'
+ UNION ALL SELECT 5.0,3.4,1.5,0.2,'setosa'
+ UNION ALL SELECT 4.4,2.9,1.4,0.2,'setosa'
+ UNION ALL SELECT 4.9,3.1,1.5,0.1,'setosa'
+ UNION ALL SELECT 5.4,3.7,1.5,0.2,'setosa'
+ UNION ALL SELECT 4.8,3.4,1.6,0.2,'setosa'
+ UNION ALL SELECT 4.8,3.0,1.4,0.1,'setosa'
+ UNION ALL SELECT 4.3,3.0,1.1,0.1,'setosa'
+ UNION ALL SELECT 5.8,4.0,1.2,0.2,'setosa'
+ UNION ALL SELECT 5.7,4.4,1.5,0.4,'setosa'
+ UNION ALL SELECT 5.4,3.9,1.3,0.4,'setosa'
+ UNION ALL SELECT 5.1,3.5,1.4,0.3,'setosa'
+ UNION ALL SELECT 5.7,3.8,1.7,0.3,'setosa'
+ UNION ALL SELECT 5.1,3.8,1.5,0.3,'setosa'
+ UNION ALL SELECT 5.4,3.4,1.7,0.2,'setosa'
+ UNION ALL SELECT 5.1,3.7,1.5,0.4,'setosa'
+ UNION ALL SELECT 4.6,3.6,1.0,0.2,'setosa'
+ UNION ALL SELECT 5.1,3.3,1.7,0.5,'setosa'
+ UNION ALL SELECT 4.8,3.4,1.9,0.2,'setosa'
+ UNION ALL SELECT 5.0,3.0,1.6,0.2,'setosa'
+ UNION ALL SELECT 5.0,3.4,1.6,0.4,'setosa'
+ UNION ALL SELECT 5.2,3.5,1.5,0.2,'setosa'
+ UNION ALL SELECT 5.2,3.4,1.4,0.2,'setosa'
+ UNION ALL SELECT 4.7,3.2,1.6,0.2,'setosa'
+ UNION ALL SELECT 4.8,3.1,1.6,0.2,'setosa'
+ UNION ALL SELECT 5.4,3.4,1.5,0.4,'setosa'
+ UNION ALL SELECT 5.2,4.1,1.5,0.1,'setosa'
+ UNION ALL SELECT 5.5,4.2,1.4,0.2,'setosa'
+ UNION ALL SELECT 4.9,3.1,1.5,0.1,'setosa'
+ UNION ALL SELECT 5.0,3.2,1.2,0.2,'setosa'
+ UNION ALL SELECT 5.5,3.5,1.3,0.2,'setosa'
+ UNION ALL SELECT 4.9,3.1,1.5,0.1,'setosa'
+ UNION ALL SELECT 4.4,3.0,1.3,0.2,'setosa'
+ UNION ALL SELECT 5.1,3.4,1.5,0.2,'setosa'
+ UNION ALL SELECT 5.0,3.5,1.3,0.3,'setosa'
+ UNION ALL SELECT 4.5,2.3,1.3,0.3,'setosa'
+ UNION ALL SELECT 4.4,3.2,1.3,0.2,'setosa'
+ UNION ALL SELECT 5.0,3.5,1.6,0.6,'setosa'
+ UNION ALL SELECT 5.1,3.8,1.9,0.4,'setosa'
+ UNION ALL SELECT 4.8,3.0,1.4,0.3,'setosa'
+ UNION ALL SELECT 5.1,3.8,1.6,0.2,'setosa'
+ UNION ALL SELECT 4.6,3.2,1.4,0.2,'setosa'
+ UNION ALL SELECT 5.3,3.7,1.5,0.2,'setosa'
+ UNION ALL SELECT 5.0,3.3,1.4,0.2,'setosa'
+ UNION ALL SELECT 7.0,3.2,4.7,1.4,'versicolor'
+ UNION ALL SELECT 6.4,3.2,4.5,1.5,'versicolor'
+ UNION ALL SELECT 6.9,3.1,4.9,1.5,'versicolor'
+ UNION ALL SELECT 5.5,2.3,4.0,1.3,'versicolor'
+ UNION ALL SELECT 6.5,2.8,4.6,1.5,'versicolor'
+ UNION ALL SELECT 5.7,2.8,4.5,1.3,'versicolor'
+ UNION ALL SELECT 6.3,3.3,4.7,1.6,'versicolor'
+ UNION ALL SELECT 4.9,2.4,3.3,1.0,'versicolor'
+ UNION ALL SELECT 6.6,2.9,4.6,1.3,'versicolor'
+ UNION ALL SELECT 5.2,2.7,3.9,1.4,'versicolor'
+ UNION ALL SELECT 5.0,2.0,3.5,1.0,'versicolor'
+ UNION ALL SELECT 5.9,3.0,4.2,1.5,'versicolor'
+ UNION ALL SELECT 6.0,2.2,4.0,1.0,'versicolor'
+ UNION ALL SELECT 6.1,2.9,4.7,1.4,'versicolor'
+ UNION ALL SELECT 5.6,2.9,3.6,1.3,'versicolor'
+ UNION ALL SELECT 6.7,3.1,4.4,1.4,'versicolor'
+ UNION ALL SELECT 5.6,3.0,4.5,1.5,'versicolor'
+ UNION ALL SELECT 5.8,2.7,4.1,1.0,'versicolor'
+ UNION ALL SELECT 6.2,2.2,4.5,1.5,'versicolor'
+ UNION ALL SELECT 5.6,2.5,3.9,1.1,'versicolor'
+ UNION ALL SELECT 5.9,3.2,4.8,1.8,'versicolor'
+ UNION ALL SELECT 6.1,2.8,4.0,1.3,'versicolor'
+ UNION ALL SELECT 6.3,2.5,4.9,1.5,'versicolor'
+ UNION ALL SELECT 6.1,2.8,4.7,1.2,'versicolor'
+ UNION ALL SELECT 6.4,2.9,4.3,1.3,'versicolor'
+ UNION ALL SELECT 6.6,3.0,4.4,1.4,'versicolor'
+ UNION ALL SELECT 6.8,2.8,4.8,1.4,'versicolor'
+ UNION ALL SELECT 6.7,3.0,5.0,1.7,'versicolor'
+ UNION ALL SELECT 6.0,2.9,4.5,1.5,'versicolor'
+ UNION ALL SELECT 5.7,2.6,3.5,1.0,'versicolor'
+ UNION ALL SELECT 5.5,2.4,3.8,1.1,'versicolor'
+ UNION ALL SELECT 5.5,2.4,3.7,1.0,'versicolor'
+ UNION ALL SELECT 5.8,2.7,3.9,1.2,'versicolor'
+ UNION ALL SELECT 6.0,2.7,5.1,1.6,'versicolor'
+ UNION ALL SELECT 5.4,3.0,4.5,1.5,'versicolor'
+ UNION ALL SELECT 6.0,3.4,4.5,1.6,'versicolor'
+ UNION ALL SELECT 6.7,3.1,4.7,1.5,'versicolor'
+ UNION ALL SELECT 6.3,2.3,4.4,1.3,'versicolor'
+ UNION ALL SELECT 5.6,3.0,4.1,1.3,'versicolor'
+ UNION ALL SELECT 5.5,2.5,4.0,1.3,'versicolor'
+ UNION ALL SELECT 5.5,2.6,4.4,1.2,'versicolor'
+ UNION ALL SELECT 6.1,3.0,4.6,1.4,'versicolor'
+ UNION ALL SELECT 5.8,2.6,4.0,1.2,'versicolor'
+ UNION ALL SELECT 5.0,2.3,3.3,1.0,'versicolor'
+ UNION ALL SELECT 5.6,2.7,4.2,1.3,'versicolor'
+ UNION ALL SELECT 5.7,3.0,4.2,1.2,'versicolor'
+ UNION ALL SELECT 5.7,2.9,4.2,1.3,'versicolor'
+ UNION ALL SELECT 6.2,2.9,4.3,1.3,'versicolor'
+ UNION ALL SELECT 5.1,2.5,3.0,1.1,'versicolor'
+ UNION ALL SELECT 5.7,2.8,4.1,1.3,'versicolor'
+ UNION ALL SELECT 6.3,3.3,6.0,2.5,'virginica'
+ UNION ALL SELECT 5.8,2.7,5.1,1.9,'virginica'
+ UNION ALL SELECT 7.1,3.0,5.9,2.1,'virginica'
+ UNION ALL SELECT 6.3,2.9,5.6,1.8,'virginica'
+ UNION ALL SELECT 6.5,3.0,5.8,2.2,'virginica'
+ UNION ALL SELECT 7.6,3.0,6.6,2.1,'virginica'
+ UNION ALL SELECT 4.9,2.5,4.5,1.7,'virginica'
+ UNION ALL SELECT 7.3,2.9,6.3,1.8,'virginica'
+ UNION ALL SELECT 6.7,2.5,5.8,1.8,'virginica'
+ UNION ALL SELECT 7.2,3.6,6.1,2.5,'virginica'
+ UNION ALL SELECT 6.5,3.2,5.1,2.0,'virginica'
+ UNION ALL SELECT 6.4,2.7,5.3,1.9,'virginica'
+ UNION ALL SELECT 6.8,3.0,5.5,2.1,'virginica'
+ UNION ALL SELECT 5.7,2.5,5.0,2.0,'virginica'
+ UNION ALL SELECT 5.8,2.8,5.1,2.4,'virginica'
+ UNION ALL SELECT 6.4,3.2,5.3,2.3,'virginica'
+ UNION ALL SELECT 6.5,3.0,5.5,1.8,'virginica'
+ UNION ALL SELECT 7.7,3.8,6.7,2.2,'virginica'
+ UNION ALL SELECT 7.7,2.6,6.9,2.3,'virginica'
+ UNION ALL SELECT 6.0,2.2,5.0,1.5,'virginica'
+ UNION ALL SELECT 6.9,3.2,5.7,2.3,'virginica'
+ UNION ALL SELECT 5.6,2.8,4.9,2.0,'virginica'
+ UNION ALL SELECT 7.7,2.8,6.7,2.0,'virginica'
+ UNION ALL SELECT 6.3,2.7,4.9,1.8,'virginica'
+ UNION ALL SELECT 6.7,3.3,5.7,2.1,'virginica'
+ UNION ALL SELECT 7.2,3.2,6.0,1.8,'virginica'
+ UNION ALL SELECT 6.2,2.8,4.8,1.8,'virginica'
+ UNION ALL SELECT 6.1,3.0,4.9,1.8,'virginica'
+ UNION ALL SELECT 6.4,2.8,5.6,2.1,'virginica'
+ UNION ALL SELECT 7.2,3.0,5.8,1.6,'virginica'
+ UNION ALL SELECT 7.4,2.8,6.1,1.9,'virginica'
+ UNION ALL SELECT 7.9,3.8,6.4,2.0,'virginica'
+ UNION ALL SELECT 6.4,2.8,5.6,2.2,'virginica'
+ UNION ALL SELECT 6.3,2.8,5.1,1.5,'virginica'
+ UNION ALL SELECT 6.1,2.6,5.6,1.4,'virginica'
+ UNION ALL SELECT 7.7,3.0,6.1,2.3,'virginica'
+ UNION ALL SELECT 6.3,3.4,5.6,2.4,'virginica'
+ UNION ALL SELECT 6.4,3.1,5.5,1.8,'virginica'
+ UNION ALL SELECT 6.0,3.0,4.8,1.8,'virginica'
+ UNION ALL SELECT 6.9,3.1,5.4,2.1,'virginica'
+ UNION ALL SELECT 6.7,3.1,5.6,2.4,'virginica'
+ UNION ALL SELECT 6.9,3.1,5.1,2.3,'virginica'
+ UNION ALL SELECT 5.8,2.7,5.1,1.9,'virginica'
+ UNION ALL SELECT 6.8,3.2,5.9,2.3,'virginica'
+ UNION ALL SELECT 6.7,3.3,5.7,2.5,'virginica'
+ UNION ALL SELECT 6.7,3.0,5.2,2.3,'virginica'
+ UNION ALL SELECT 6.3,2.5,5.0,1.9,'virginica'
+ UNION ALL SELECT 6.5,3.0,5.2,2.0,'virginica'
+ UNION ALL SELECT 6.2,3.4,5.4,2.3,'virginica'
+ UNION ALL SELECT 5.9,3.0,5.1,1.8,'virginica';
+
+
+ CALL bqutil.procedure.t_test('iris', 'sepal_width', 'iris', 'petal_width', result);
+
+ -- We round to 11 decimals here because there appears to be some inconsistency in the function, likely due to floating point errors and the order of aggregation
+ ASSERT ROUND(result.t_value, 11) = 25.88834390257;
+ ASSERT result.dof = 298;
+ ASSERT result.p_value = 1.0;
+END;
+