- Transfer the vtc file to nii file.
Open the "Transfer_vtc_to_nii.py" at the last line Change to the folder you wanna transfer, it will automatically transfer the all of the vtc files to the Wii files.
- Transfer the msg file to nii file.
Open the "Transfer_msk_to_nii.py" file and roll down to the last line Change to the folder which the mask exist. And it will output the correct mask.
- Using "isc_cli.py" to calculate the Intern subject calculations.
At the command line input the following command
python3 isc_cli.py --input s1.nii.gz s2.nii.gz s3.nii.gz \\
--output isc --mask mask.nii.gz --zscore --fisherz
python3 isc_cli.py --input s*.nii.gz --output iscs.nii.gz \\
--mask mask.nii.gz --zscore --summarize stack
python3 isc_cli.py --input s*.nii.gz --output mean_isc.nii.gz \\
--mask mask.nii.gz --zscore --summarize mean
You will get the result on where the folder you given.