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The Francis Crick Institute

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  1. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  2. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  3. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 7

  4. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

  5. cbias-napari cbias-napari Public

    Introduction to Napari training course

    Jupyter Notebook 5 1

  6. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 4

Repositories

Showing 10 of 117 repositories
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    FrancisCrickInstitute/OmeSliCC’s past year of commit activity
    Python 7 1 0 0 Updated Jul 3, 2024
  • TWOMBLI Public Forked from wershofe/TWOMBLI

    A ImageJ Plugin implementation of TWOMBLI

    FrancisCrickInstitute/TWOMBLI’s past year of commit activity
    Java 0 3 10 0 Updated Jul 1, 2024
  • PARSEG Public

    A novel approach to tackle overlapping segmentation in bioimages. Vanessa Dao, ELMI 2024

    FrancisCrickInstitute/PARSEG’s past year of commit activity
    Jupyter Notebook 0 CC-BY-SA-4.0 0 6 0 Updated Jun 28, 2024
  • Bpod_Gen2 Public Forked from sanworks/Bpod_Gen2

    Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)

    FrancisCrickInstitute/Bpod_Gen2’s past year of commit activity
    MATLAB 0 GPL-3.0 35 0 0 Updated Jun 27, 2024
  • AIoD-Model-Registry Public

    The core registry for all AI models available on AI on Demand

    FrancisCrickInstitute/AIoD-Model-Registry’s past year of commit activity
    Python 0 0 2 0 Updated Jun 26, 2024
  • FrancisCrickInstitute/Multichannel_photodiode’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jun 19, 2024
  • FrancisCrickInstitute/Making-Lab-Repositories’s past year of commit activity
    2 0 0 0 Updated Jun 18, 2024
  • CALM_Template Public template
    FrancisCrickInstitute/CALM_Template’s past year of commit activity
    Jupyter Notebook 0 CC-BY-SA-4.0 0 0 0 Updated Jun 13, 2024
  • CALM Public

    Crick Advanced Light Microscopy

    FrancisCrickInstitute/CALM’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 4 0 Updated Jun 10, 2024
  • segment-anything Public Forked from facebookresearch/segment-anything

    The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

    FrancisCrickInstitute/segment-anything’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 5,428 0 0 Updated Jun 3, 2024

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