Pinned

1. TrimGalore TrimGalore Public

   A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

   Perl 438 146

2. Bismark Bismark Public

   A tool to map bisulfite converted sequence reads and determine cytosine methylation states

   HTML 361 102

3. SNPsplit SNPsplit Public

   Allele-specific alignment sorting

   Perl 50 19

4. reStrainingOrder reStrainingOrder Public

   A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes Project

   LilyPond 3 1

5. IMPLICON IMPLICON Public

   A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)

   Python 2