v0.6

• Substantial reduction in memory usage
• CRAM input now supported
• Minor speed up

Download tardis-0.6.tar.gz, which includes the dependencies.

v0.5.5

• Fixed a bug in NUMT reporting
• If --out parameter is missing, the output is defaulted to [input.bam]-output.vcf

Download the tardis-0.5.5.tar.gz which includes all the necessary submodules.

v0.5.4

• Sequence resolved calls are optional now (--resolved)
• Allows skipping interspersed duplications with "--no-interdup"

Download the tardis-0.5.4.tar.gz which includes all the necessary submodules.

v0.5.3

• Bug fixes
• Hopefully ready for Docker now.

Download the tardis-0.5.3.tar.gz which includes all the necessary submodules.

v0.5.2

Download the tardis-0.5.2.tar.gz which includes all the necessary submodules.

v0.5.1

Minor bug fix when the help or version commands are invoked.
Repo cleanup.

Download the tardis-0.5.1.tar-with-submodules.tar.gz which includes all the necessary submodules.

v0.5: Removed docker temporarily

• Added nuclear mitochondrial insertion clustering
• Added preliminary 10x support.
• Several minor updates
• Various bug fixes

v0.4: Added missing duplication files

• Interspersed Segmental Duplications with direct and inverted orientations
• Updated Tandem Duplications
• Various bug fixes and updates

v0.3

• Split read mapping is now faster with >30% speed up.
• Several other minor bug fixes.

v0.2 Universe Reboot Edition

TARDIS v0.2, includes SONIC as the file container. Released on June 26 2017: the seventh anniversary of the Universe Reboot.

• Reference genome annotations are now contained in a single compressed file (SONIC)
• Simpler command line
• Several bugfixes