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@AdaptiveMotorControlLab

Mathis Lab @ EPFL

Mechanisms underlying adaptive behavior in intelligent systems

Welcome to the M. Mathis Lab 👋

Group 23

We are a team of neuroscientists, computer scientists and enigneers that come together to tackle one of the largest challanges in neuroscience - how does the brain drive adaptive behavior. Our world is always changing: how do our brains adapt? We develop new machine learning methods that enable us to understand the mechanisms underlying adaptive behavior in intelligence systems, aka “adaptive intelligence”.

  • From 2017-2023 we were also called the Mathis Lab of Adaptive Motor Control (hence the org name!) but decided to rename ourselves to better reflect our ML and systems neuro sides of the lab 🖤. We still really like sensorimotor control though!

Check out our website for more information, and see our open source code below!

Of particular interest:

  • DeepLabCut: for animal pose estimation
  • CEBRA: for supervised and unsupervised dimensionality reduction (behavioral data, neural, or both!)
  • AmadeusGPT: for using large language models as systems for behavioral analysis.
  • cellseg3D: for 3D mesoSPIM segmentation of cell soma

Pinned

  1. CEBRA CEBRA Public

    Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

    Python 847 65

  2. DLC2Kinematics DLC2Kinematics Public

    a module for kinematic analysis of deeplabcut outputs

    Jupyter Notebook 123 25

  3. CellSeg3d CellSeg3d Public

    A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

    Jupyter Notebook 53 8

  4. JoystickControlSystem JoystickControlSystem Public

    joystick system used in Mathis et al, 2017

    Python 4 1

  5. AmadeusGPT AmadeusGPT Public

    [NeurIPS 2023] We turn natural language descriptions of behaviors into machine-executable code

    Python 179 6

  6. CEBRA-demos CEBRA-demos Public

    CEBRA Demo Notebooks. Please see all of them at the URL below:

    Jupyter Notebook 9 4

Repositories

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