{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":401301588,"defaultBranch":"dev","name":"zarp","ownerLogin":"zavolanlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-08-30T10:21:36.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25588245?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1709685448.0","currentOid":""},"activityList":{"items":[{"before":"ccc13f92c0a91d5e80c4f29e7303c6802e3c538c","after":"ac953471b475b9f1b81ac08679d01fc4c2f98d9d","ref":"refs/heads/main","pushedAt":"2024-03-06T00:36:59.000Z","pushType":"push","commitsCount":37,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"feat: multiorganism support (#172)","shortMessageHtmlLink":"feat: multiorganism support (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2144945941\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/172\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/172/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/172\">#172</a>)"}},{"before":"930a81822b9d39adab752929703981016e5cc955","after":"ccc13f92c0a91d5e80c4f29e7303c6802e3c538c","ref":"refs/heads/main","pushedAt":"2024-03-06T00:32:45.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix: add snakemake-workflow-catalog.yml (#102)","shortMessageHtmlLink":"fix: add snakemake-workflow-catalog.yml (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1466957739\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/102\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/102/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/102\">#102</a>)"}},{"before":"abe1de2ccc331d5eb64f2824879b53f5b785108c","after":"ac953471b475b9f1b81ac08679d01fc4c2f98d9d","ref":"refs/heads/dev","pushedAt":"2024-02-21T10:11:15.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"feat: multiorganism support (#172)","shortMessageHtmlLink":"feat: multiorganism support (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2144945941\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/172\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/172/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/172\">#172</a>)"}},{"before":"9c6966e54e361ed1bd4036ea02bee2027b13b929","after":null,"ref":"refs/heads/issue_171_multiorganism_support","pushedAt":"2024-02-21T10:11:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"}},{"before":"ef48042d9ac5d59d5de10db114756e6142b9a606","after":"9c6966e54e361ed1bd4036ea02bee2027b13b929","ref":"refs/heads/issue_171_multiorganism_support","pushedAt":"2024-02-20T17:27:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: test samples paths","shortMessageHtmlLink":"fix: test samples paths"}},{"before":"2afde9d94d2fe50d5a56c6ce748214821c1fd99e","after":"ef48042d9ac5d59d5de10db114756e6142b9a606","ref":"refs/heads/issue_171_multiorganism_support","pushedAt":"2024-02-20T17:10:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: keep order of samples within snakemake","shortMessageHtmlLink":"fix: keep order of samples within snakemake"}},{"before":"df5dd7fd3c3e63962575e7b63724c0e14b465a8e","after":"2afde9d94d2fe50d5a56c6ce748214821c1fd99e","ref":"refs/heads/issue_171_multiorganism_support","pushedAt":"2024-02-20T14:35:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: test sample paths","shortMessageHtmlLink":"fix: test sample paths"}},{"before":"f9ca2eaebb81b70e113d9d64aeb26c9e4a7286e1","after":"df5dd7fd3c3e63962575e7b63724c0e14b465a8e","ref":"refs/heads/issue_171_multiorganism_support","pushedAt":"2024-02-20T14:13:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: test_integration_workflow sample paths","shortMessageHtmlLink":"fix: test_integration_workflow sample paths"}},{"before":null,"after":"f9ca2eaebb81b70e113d9d64aeb26c9e4a7286e1","ref":"refs/heads/issue_171_multiorganism_support","pushedAt":"2024-02-20T13:43:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: snakeformat","shortMessageHtmlLink":"fix: snakeformat"}},{"before":"9aff2b75f8ec7f6fd2fcce7839c95527129d9415","after":null,"ref":"refs/heads/install_cli","pushedAt":"2024-02-13T14:50:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"}},{"before":"1dd98df013d6e8e0a86aadf0d99f6aee66dbdda7","after":"abe1de2ccc331d5eb64f2824879b53f5b785108c","ref":"refs/heads/dev","pushedAt":"2024-02-13T14:50:20.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"docs: update ZARP-cli installation instructions (#170)","shortMessageHtmlLink":"docs: update ZARP-cli installation instructions (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2132091502\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/170\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/170/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/170\">#170</a>)"}},{"before":null,"after":"9aff2b75f8ec7f6fd2fcce7839c95527129d9415","ref":"refs/heads/install_cli","pushedAt":"2024-02-13T11:12:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"docs: update ZARP-cli installation instructions","shortMessageHtmlLink":"docs: update ZARP-cli installation instructions"}},{"before":"c085c87d719ef41daae9d023e7d15da2786bdfac","after":null,"ref":"refs/heads/chores","pushedAt":"2024-02-11T12:00:06.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"}},{"before":"4b5a1cc6f828c6caef2b92695b076ad9cceb9900","after":"1dd98df013d6e8e0a86aadf0d99f6aee66dbdda7","ref":"refs/heads/dev","pushedAt":"2024-02-11T12:00:05.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"feat(htsinfer): support Conda execution","shortMessageHtmlLink":"feat(htsinfer): support Conda execution"}},{"before":null,"after":"c085c87d719ef41daae9d023e7d15da2786bdfac","ref":"refs/heads/chores","pushedAt":"2024-02-11T11:33:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"feat(htsinfer): support Conda execution","shortMessageHtmlLink":"feat(htsinfer): support Conda execution"}},{"before":"a7df872f766cfc35cfa38909ed4528e280ff6445","after":null,"ref":"refs/heads/issue_166_get_layout","pushedAt":"2024-02-05T17:35:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"}},{"before":"c55a7a7a030a2f894ddb8ce5142f8713c0937d1f","after":"4b5a1cc6f828c6caef2b92695b076ad9cceb9900","ref":"refs/heads/dev","pushedAt":"2024-02-05T17:35:35.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix(sra): improve layout extraction from NCBI db (#168)","shortMessageHtmlLink":"fix(sra): improve layout extraction from NCBI db (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2119068371\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/168\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/168/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/168\">#168</a>)"}},{"before":"e55c91036d65909d1b265a6bff6f4be9f02cf8fc","after":"a7df872f766cfc35cfa38909ed4528e280ff6445","ref":"refs/heads/issue_166_get_layout","pushedAt":"2024-02-05T17:09:17.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: updated with dev","shortMessageHtmlLink":"fix: updated with dev"}},{"before":"c8a70ea65e2c6a725fd6d0d2a54723f5bf8c1fa2","after":"e55c91036d65909d1b265a6bff6f4be9f02cf8fc","ref":"refs/heads/issue_166_get_layout","pushedAt":"2024-02-05T16:59:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: snakefmt of get_layout","shortMessageHtmlLink":"fix: snakefmt of get_layout"}},{"before":null,"after":"c8a70ea65e2c6a725fd6d0d2a54723f5bf8c1fa2","ref":"refs/heads/issue_166_get_layout","pushedAt":"2024-02-05T15:33:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mkatsanto","name":"Maria Katsantoni","path":"/mkatsanto","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31883096?s=80&v=4"},"commit":{"message":"fix: get_layout function","shortMessageHtmlLink":"fix: get_layout function"}},{"before":"5011930604362c78bcf85aa1f60cb1b0fdada4be","after":null,"ref":"refs/heads/efetch_issue","pushedAt":"2024-02-04T22:34:51.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"}},{"before":"61a925fa8ab82c4fd3d9799adad0053437794213","after":"c55a7a7a030a2f894ddb8ce5142f8713c0937d1f","ref":"refs/heads/dev","pushedAt":"2024-02-04T22:34:50.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix(SRA download): address efetch failures (#167)","shortMessageHtmlLink":"fix(SRA download): address efetch failures (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2117331927\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/167\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/167/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/167\">#167</a>)"}},{"before":"e7c353d2954bb1dc74f4eba1cfb28417c7508b21","after":"5011930604362c78bcf85aa1f60cb1b0fdada4be","ref":"refs/heads/efetch_issue","pushedAt":"2024-02-04T21:55:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":null,"after":"e7c353d2954bb1dc74f4eba1cfb28417c7508b21","ref":"refs/heads/efetch_issue","pushedAt":"2024-02-04T21:02:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix: temporary fix for efetch problem","shortMessageHtmlLink":"fix: temporary fix for efetch problem"}},{"before":"b5ef22e934bc5ed82c823764f5f144bdd6227581","after":null,"ref":"refs/heads/fix_pandas_warnings","pushedAt":"2024-02-04T04:19:00.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"}},{"before":"df1ccfbcf781391cf18e6e6c9f89ced2782698a5","after":"61a925fa8ab82c4fd3d9799adad0053437794213","ref":"refs/heads/dev","pushedAt":"2024-02-04T04:18:59.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"chore: deprecation warnings for get_sample() (#164)","shortMessageHtmlLink":"chore: deprecation warnings for get_sample() (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2116868298\" data-permission-text=\"Title is private\" data-url=\"https://github.com/zavolanlab/zarp/issues/164\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/zavolanlab/zarp/pull/164/hovercard\" href=\"https://github.com/zavolanlab/zarp/pull/164\">#164</a>)"}},{"before":"1c90c2f61960e6ac2e71bed114d34a5ee0bcc289","after":"b5ef22e934bc5ed82c823764f5f144bdd6227581","ref":"refs/heads/fix_pandas_warnings","pushedAt":"2024-02-04T04:02:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix implementation if search_id is not given","shortMessageHtmlLink":"fix implementation if search_id is not given"}},{"before":"081c0d38d8f3a84cbca05b109f525a3004c8ba5e","after":"1c90c2f61960e6ac2e71bed114d34a5ee0bcc289","ref":"refs/heads/fix_pandas_warnings","pushedAt":"2024-02-04T03:52:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix snakefmt complaint","shortMessageHtmlLink":"fix snakefmt complaint"}},{"before":null,"after":"081c0d38d8f3a84cbca05b109f525a3004c8ba5e","ref":"refs/heads/fix_pandas_warnings","pushedAt":"2024-02-04T03:47:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"},"commit":{"message":"fix: deprecation warnings for get_sample()","shortMessageHtmlLink":"fix: deprecation warnings for get_sample()"}},{"before":"425639e087ea8e4eb12deea7a1643eba1a22a0cc","after":null,"ref":"refs/heads/actions_upgrade","pushedAt":"2024-02-04T03:24:47.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"uniqueg","name":"Alex Kanitz","path":"/uniqueg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10855418?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEDWoRIAA","startCursor":null,"endCursor":null}},"title":"Activity · zavolanlab/zarp"}