From 9ce6a66ad7cde8dab9b605efd53a5abb9390c60f Mon Sep 17 00:00:00 2001
From: Vladimir Mikryukov <v.mikryukov@gmail.com>
Date: Fri, 26 Apr 2024 10:40:41 +0300
Subject: [PATCH] schema upd - add nexus trees

---
 nextflow_schema.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nextflow_schema.json b/nextflow_schema.json
index a13068c..27a2a13 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -30,10 +30,10 @@
                 "phytree": {
                     "type": "string",
                     "fa_icon": "fas fa-tree",
-                    "description": "Custom phylogenetic tree in Newick format",
+                    "description": "Custom phylogenetic tree in the Newick of Nexus format",
                     "format": "file-path",
                     "mimetype": "text/x-nh",
-                    "pattern": ".nwk$|.{n,N}ewick$|.tre$|.tree$",
+                    "pattern": ".nwk$|.{n,N}ewick$|.tre$|.tree$|.nex$|.{n,N}exus$|.nxs$",
                     "help_text": "Tips should be labeled either with Latin binomials (e.g., \"Homo_sapiens\"), or with Open Tree IDs (e.g, \"ott359899\"). Please adjust the `--phylabels` parameter correspondingly."
                 }
             }