-
Notifications
You must be signed in to change notification settings - Fork 191
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
a problem about vg autoidex (v1.56.0) #4271
Comments
The error output that you got probably means that your GTF includes transcripts where exons are annotated on both strands of the reference sequence. This is not something that |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1. What were you trying to do?
Preparing for the
mpmap
workflow usingvg autoindex
.2. What did you want to happen?
3. What actually happened?
4. If you got a line like
Stack trace path: /somewhere/on/your/computer/stacktrace.txt
, please copy-paste the contents of that file here:vg_autoindex_17385.log
5. What data and command can the vg dev team use to make the problem happen?
We tried to analyse a mammalian fasta, VCF, GTF file using vg autoindex. Among them, GTF files are transcripts and exons predicted by
isoquant
software and merge byAGAT
. The run process reported an error in log file.6. What does running
vg version
say?The text was updated successfully, but these errors were encountered: