{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":732121035,"defaultBranch":"main","name":"long-read-giraffe-experiments","ownerLogin":"vgteam","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-12-15T17:38:41.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/15925452?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718740921.0","currentOid":""},"activityList":{"items":[{"before":"1193bd019258d04b478876de96af980f1e23cdc2","after":"7ae87d9af574fe160dd7b07011d52e299e001de6","ref":"refs/heads/main","pushedAt":"2024-06-20T14:45:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Test HiFi reads on R10 preset","shortMessageHtmlLink":"Test HiFi reads on R10 preset"}},{"before":"f6f9826bf7a75e8c3eea0e56096153e0a2e059bf","after":"1193bd019258d04b478876de96af980f1e23cdc2","ref":"refs/heads/main","pushedAt":"2024-06-20T14:38:57.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Turn exclusive timings off again","shortMessageHtmlLink":"Turn exclusive timings off again"}},{"before":"d86efcfb35fb0f831201ff517d2a4ebefab96416","after":"f6f9826bf7a75e8c3eea0e56096153e0a2e059bf","ref":"refs/heads/main","pushedAt":"2024-06-18T20:45:17.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/main'","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/main'"}},{"before":"543256a316348485bbb09a26744d7a838c45b4d4","after":null,"ref":"refs/heads/master","pushedAt":"2024-06-18T20:02:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"}},{"before":null,"after":"543256a316348485bbb09a26744d7a838c45b4d4","ref":"refs/heads/master","pushedAt":"2024-06-18T20:01:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Add script URL","shortMessageHtmlLink":"Add script URL"}},{"before":"2ea0c4cc953f27b6573cc062765362545857a90e","after":null,"ref":"refs/heads/sampled","pushedAt":"2024-06-13T01:17:34.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"}},{"before":"db5f4f720bb88eac08d6ff553ec43cacd46cb74d","after":"d86efcfb35fb0f831201ff517d2a4ebefab96416","ref":"refs/heads/main","pushedAt":"2024-06-13T01:17:31.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Merge pull request #37 from vgteam/sampled\n\nAdd an experiment for sampled graphs","shortMessageHtmlLink":"Merge pull request #37 from vgteam/sampled"}},{"before":null,"after":"2ea0c4cc953f27b6573cc062765362545857a90e","ref":"refs/heads/sampled","pushedAt":"2024-06-13T01:16:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Add an experiment for sampled graphs","shortMessageHtmlLink":"Add an experiment for sampled graphs"}},{"before":"39d4cdd8f762e3e3d50d2f9ac8b0ead2a6428397","after":"db5f4f720bb88eac08d6ff553ec43cacd46cb74d","ref":"refs/heads/main","pushedAt":"2024-06-10T21:23:16.000Z","pushType":"push","commitsCount":30,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Set up for evaluating R10 speed accurately","shortMessageHtmlLink":"Set up for evaluating R10 speed accurately"}},{"before":"ae32207c5da3452c2a5f485b82df4b5109fa914a","after":"39d4cdd8f762e3e3d50d2f9ac8b0ead2a6428397","ref":"refs/heads/main","pushedAt":"2024-06-10T18:04:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Document softclipped_or_unmapped plot","shortMessageHtmlLink":"Document softclipped_or_unmapped plot"}},{"before":"1cea6f5e1d3e62e4a29d759d0975727f8f95dbbe","after":"ae32207c5da3452c2a5f485b82df4b5109fa914a","ref":"refs/heads/main","pushedAt":"2024-06-07T21:44:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Test evaluating chain score ordering and max middle DP bases","shortMessageHtmlLink":"Test evaluating chain score ordering and max middle DP bases"}},{"before":"0e3584ef32a928a76065f1d44b871534ca2d322b","after":"1cea6f5e1d3e62e4a29d759d0975727f8f95dbbe","ref":"refs/heads/main","pushedAt":"2024-06-06T20:28:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Evaluate fragmenting parameters","shortMessageHtmlLink":"Evaluate fragmenting parameters"}},{"before":"3e97098bb8e4d85e7b3050a47a850c1db375ce36","after":"591993d6bb99a6735e3fb200f8dc391b89cbfeac","ref":"refs/heads/speed","pushedAt":"2024-06-06T00:24:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Get memory from log for bwa too","shortMessageHtmlLink":"Get memory from log for bwa too"}},{"before":"b4e6ef77233d6b62721e8d62d117db99f5e5e40d","after":"3e97098bb8e4d85e7b3050a47a850c1db375ce36","ref":"refs/heads/speed","pushedAt":"2024-06-05T23:35:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Take out old version because it didn't really work","shortMessageHtmlLink":"Take out old version because it didn't really work"}},{"before":"3dcffc6638b0b1348e9cc6795dc32777e9bb3e90","after":"0e3584ef32a928a76065f1d44b871534ca2d322b","ref":"refs/heads/main","pushedAt":"2024-06-05T16:59:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Note softclip is per end","shortMessageHtmlLink":"Note softclip is per end"}},{"before":"fb3a895e7b219bf0b83708dcf5764bbb0abe9fcc","after":"3dcffc6638b0b1348e9cc6795dc32777e9bb3e90","ref":"refs/heads/main","pushedAt":"2024-06-05T16:55:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Add machinery for plotting softclipped-or-unmapped bases","shortMessageHtmlLink":"Add machinery for plotting softclipped-or-unmapped bases"}},{"before":"71e1b7609874dc5ae0e449af4b3b0e26ace46b35","after":"b4e6ef77233d6b62721e8d62d117db99f5e5e40d","ref":"refs/heads/speed","pushedAt":"2024-06-04T19:41:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Add option to run old version of giraffe","shortMessageHtmlLink":"Add option to run old version of giraffe"}},{"before":"f3d40da02bee77b4bc2637e6998b8020088da83d","after":"fb3a895e7b219bf0b83708dcf5764bbb0abe9fcc","ref":"refs/heads/main","pushedAt":"2024-05-31T21:44:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Add experiment to evaluate gap scale and mark script executable","shortMessageHtmlLink":"Add experiment to evaluate gap scale and mark script executable"}},{"before":"db4c2a709e91c0f588fd145e2b5531d32adb6021","after":"71e1b7609874dc5ae0e449af4b3b0e26ace46b35","ref":"refs/heads/speed","pushedAt":"2024-05-28T15:37:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Fix bwa speed","shortMessageHtmlLink":"Fix bwa speed"}},{"before":"097b3e24a1be4fb15dd4248b68c9fd2821e6557e","after":"db4c2a709e91c0f588fd145e2b5531d32adb6021","ref":"refs/heads/speed","pushedAt":"2024-05-27T20:55:27.000Z","pushType":"push","commitsCount":12,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/speed' into HEAD","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/speed' into HEAD"}},{"before":"c2cee377801599390c27c4769c592b1b40aac162","after":"097b3e24a1be4fb15dd4248b68c9fd2821e6557e","ref":"refs/heads/speed","pushedAt":"2024-05-27T07:33:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Add commas","shortMessageHtmlLink":"Add commas"}},{"before":"5cb6fc152c92c7f7a004ba6c932fa14d8fc4d74e","after":"c2cee377801599390c27c4769c592b1b40aac162","ref":"refs/heads/speed","pushedAt":"2024-05-26T10:10:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Add bwa mem but not indexing","shortMessageHtmlLink":"Add bwa mem but not indexing"}},{"before":"685ec8da3084c5db0570e72dd6a56401184c4b0b","after":"f3d40da02bee77b4bc2637e6998b8020088da83d","ref":"refs/heads/main","pushedAt":"2024-05-24T23:25:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Add experiments trying to work out what's up with softclips","shortMessageHtmlLink":"Add experiments trying to work out what's up with softclips"}},{"before":"641c4e91604ec1ff1f7b39e66226277ae538ed3d","after":"5cb6fc152c92c7f7a004ba6c932fa14d8fc4d74e","ref":"refs/heads/speed","pushedAt":"2024-05-24T10:43:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Give experiment_mapping_stats priority over experiment_stat_table and get softclips for graphaligner","shortMessageHtmlLink":"Give experiment_mapping_stats priority over experiment_stat_table and…"}},{"before":"d9a53eae17750aed0e207cda2193ed489e467c6e","after":"685ec8da3084c5db0570e72dd6a56401184c4b0b","ref":"refs/heads/main","pushedAt":"2024-05-23T21:56:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Tune weighted indexing memory and do a bigger weighting experiment","shortMessageHtmlLink":"Tune weighted indexing memory and do a bigger weighting experiment"}},{"before":"65e519feffda98807982abb3829930ce3e7ef862","after":"d9a53eae17750aed0e207cda2193ed489e467c6e","ref":"refs/heads/main","pushedAt":"2024-05-23T21:55:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"adamnovak","name":"Adam Novak","path":"/adamnovak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062495?s=80&v=4"},"commit":{"message":"Actually weight the weighted indexes","shortMessageHtmlLink":"Actually weight the weighted indexes"}},{"before":"4b6d11ae06fd282f2633481967b3949f1d9a5b34","after":"641c4e91604ec1ff1f7b39e66226277ae538ed3d","ref":"refs/heads/speed","pushedAt":"2024-05-23T15:31:56.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Fix formatting of tales","shortMessageHtmlLink":"Fix formatting of tales"}},{"before":"2f3f0ce0cd170b46a2f50e6565e7ce73d75b3546","after":"4b6d11ae06fd282f2633481967b3949f1d9a5b34","ref":"refs/heads/speed","pushedAt":"2024-05-23T14:39:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Make separate tables for experiment mapping stats with simulated and real reads","shortMessageHtmlLink":"Make separate tables for experiment mapping stats with simulated and …"}},{"before":"b368e1a2c1d054c74aa00e17ccc852b860eaa231","after":"2f3f0ce0cd170b46a2f50e6565e7ce73d75b3546","ref":"refs/heads/speed","pushedAt":"2024-05-23T09:42:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Move column for finding speed","shortMessageHtmlLink":"Move column for finding speed"}},{"before":"181315feaaf6f09f32d8d2379988b0dcfb751116","after":"b368e1a2c1d054c74aa00e17ccc852b860eaa231","ref":"refs/heads/speed","pushedAt":"2024-05-23T09:19:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"xchang1","name":"Xian Chang","path":"/xchang1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34357324?s=80&v=4"},"commit":{"message":"Add softclips to paramsearch table","shortMessageHtmlLink":"Add softclips to paramsearch table"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEaq67SAA","startCursor":null,"endCursor":null}},"title":"Activity · vgteam/long-read-giraffe-experiments"}