MultisessionFuture (<none>) failed to receive results from cluster RichSOCKnode

[mohmdsh]

Summary:

I have an error from compiling stan.

Description:

I made a Docker image of Rstudio with Rstan packages and dependencies. I used a When I run my model, it returns an error as shown below:

Sys.setenv(R_FUTURE_RNG_ONMISUSE = "ignore") 
MODEL1.nae <- brm(depfactor ~ factor1 + factor2 +
 Factor3 + factor4 + factor5 +
  (1 | labid) + (1 | subid_unique),
data = data.nae,
family = gaussian,
prior = prior_nae_1,
iter = 4000,
warmup = 2000,
chains = 4,
save_pars = save_pars(all = T),
control = list(adapt_delta = .95),
seed = 456
)

summary(MODEL1.nae)

MODEL2.nae <- brm(depfactor~ factor1 + factor2 +
  Factor3 + factor4 +
  (1 | labid) + (1 | subid_unique),
data = data.nae,
family = gaussian,
prior = prior_nae_null_1,
iter = 4000,
warmup = 2000,
chains = 4,
save_pars = save_pars(all = T),
control = list(adapt_delta = .95),
seed = 123
)

summary(MODEL2.nae)
Chain 1: 
Chain 1:  Elapsed Time: 4.1159 seconds (Warm-up)
Chain 1:                1.85004 seconds (Sampling)
Chain 1:                5.96594 seconds (Total)
Chain 1: 
Error in unserialize(node$con) : 
  MultisessionFuture (<none>) failed to receive results from cluster RichSOCKnode #2 (PID 4567 on localhost 'localhost'). The reason reported was 'error reading from connection'. Post-mortem diagnostic: No process exists with this PID, i.e. the localhost worker is no longer alive. Detected a non-exportable reference ('externalptr' of class 'DLLHandle') in one of the globals ('args' of class 'list') used in the future expression. The total size of the 1 globals exported is 158.91 KiB. There is one global: 'args' (158.91 KiB of class 'list')

A snap of my Dockerfile:

FROM rocker/tidyverse:latest

# customizing RStudio
COPY build_imports/.config /home/rstudio/.config
COPY build_imports/.Rprofile /home/rstudio/

# copying the .R folder with Makevars
COPY build_imports/.R /home/rstudio/.R

# rstudio owns ~
RUN chown -R rstudio:rstudio /home/rstudio/

# installing libs
RUN apt-get update \
	&& apt-get install -y --no-install-recommends \
	clang \
    libv8-dev \
    libudunits2-dev \
    libgdal-dev \
    libgeos-dev \
    libproj-dev \
    libxml2 \
    libxml2-dev \
    libglpk-dev

# installing rstan
RUN install2.r --error --deps TRUE \
    BH\
    StanHeaders\
    Rcpp \
    RcppEigen \
    RcppParallel \
    inline \
    loo \
    pkgbuild \
    rstan \
    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

# need to get graph as a dep for igraph
RUN R -e "BiocManager::install('graph')"

# direct installs of a few more deps
RUN install2.r --error --deps TRUE \
    igraph \
    posterior \
    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

# cmdstanr as a dep for brms
RUN install2.r --error --deps TRUE -r "https://mc-stan.org/r-packages/" \
    cmdstanr \
    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

RUN install2.r --error --deps TRUE \
    brms \
    tidybayes \
    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

RUN install2.r --error --deps TRUE \
    janitor \
    renv \
    here \
    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

I am not sure of the bug is related to Rstan, or Docker image dependencies or due to memory issue.