-
Notifications
You must be signed in to change notification settings - Fork 48
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
gene fusion feature request. #36
Comments
Dear Peng, Regarding your other question, choice of somatic variant detection pipeline, there are a number of options available. In general, making a consensus set from multiple calling algorithms have proven to be strategy that can minimize the impact of false positive calls. In this regard, the pipelines provided by bcbio is very solid, a number of PCGR users are using these. regards, |
Maybe some inspiration can be found here: https://github.com/nf-core/rnafusion |
Hi, Sigven, Now PCGR can analysis SNV/INDEl and CNA. would you like to add gene fusion function in the future?
Another question is that given tumor/normal raw data(fastq), can you recommend some pipeline to generate accurate variant file(vcf) ? The vcf looks like pcgr's examples, has multiple variant caller info.
This info can display on the HTML report.
thanks !
The text was updated successfully, but these errors were encountered: