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setup.py
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setup.py
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import setuptools
setuptools.setup(
name='pcgr',
version='1.4.1', # versioned by bump2version
license='MIT',
author='Sigve Nakken',
author_email='[email protected]',
description='Personal Cancer Genome Reporter (PCGR) - variant interpretation for precision cancer medicine',
url='https://github.com/sigven/pcgr',
packages=setuptools.find_packages(),
entry_points={
'console_scripts': [
'pcgr = pcgr.main:cli',
'cpsr = pcgr.cpsr:main'
]
},
scripts=[
'scripts/annoutils.py',
'scripts/cpsr_validate_input.py',
'scripts/pcgr_summarise.py',
'scripts/pcgr_validate_input.py',
'scripts/pcgr_vcfanno.py',
'scripts/pcgrr.R',
'scripts/cpsr.R'
]
)