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PyVol missing MSMS and cant find it (reoccuring issue) #10

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BDGrows opened this issue Jul 19, 2022 · 2 comments
Open

PyVol missing MSMS and cant find it (reoccuring issue) #10

BDGrows opened this issue Jul 19, 2022 · 2 comments

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@BDGrows
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BDGrows commented Jul 19, 2022

image
I keep getting the same issues as others using Pymol when attempting to get pyvol to work. I had to go as far as using the program on Ubuntu in order to get it working. Any suggestions on how to fix this?

@RashedCh
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RashedCh commented Jul 19, 2022

I have had the same issue with a Mac OS. Did you get back from the author? @rhs2132 @schlessingerlab

@xiongmuya
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xiongmuya commented Feb 16, 2024

I also had the same issue on Mac OS. And I cannot download msms with conda, so I chose to download it manually.
Firstly, I downloaded msms package (Mac OS (Mojave and after)) manually on the website https://ccsb.scripps.edu/msms/downloads/.
Secondly, on a Mac OS, double-click to unpack it and go to /Downloads/msms_x86_64Darwin_2.6.1/. In this directory, the execution file of msms is /Users/user-name/Downloads/msms_x86_64Darwin_2.6.1/msms_x86_64Darwin_2.6.1
Thirdly and importantly, we should add this path of execution file to the environmental path of PyMOL. For Mac OS, the command as follow:
sudo ln -s /Users/user-name/Downloads/msms_x86_64Darwin_2.6.1/msms_x86_64Darwin_2.6.1 /Applications/PyMOL.app/Contents/bin/msms
Finally, it's ok!

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