tradis_comparison issue

[pmireland]

on a new machine, fresh conda install:

Any thoughts on how to rectify? Thanks

phil@BA085063:~$ tradis_comparison.R -h
Loading required package: edgeR
Loading required package: limma
Error: package or namespace load failed for ‘edgeR’:
package ‘edgeR’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version
Warning message:
package ‘edgeR’ is not available (for R version 3.6.1)

[pmireland]

Repeated on multiple occasions with clean install. Can't get past the issue.

[lbarquist]

Hi,

I assume you tried reinstalling edgeR as the error suggests?

-Lars

[sbastkowski]

Hi pmireland,
I have this issue when I use a certain image of Ubuntu in my VM, as it come with an incompatible R version. I either used a Centos image or used the docker option on Ubuntu. I hope that helps.