diff --git a/docs/goods_bads.md b/docs/goods_bads.md index 7035065..ee525a3 100644 --- a/docs/goods_bads.md +++ b/docs/goods_bads.md @@ -24,7 +24,7 @@ Here is an example scenario ... - # Clen the installation folder (unless you want to keep it) + # Clean the installation folder (unless you want to keep it) rm -rf /installs ``` diff --git a/docs/remote_repositories.md b/docs/remote_repositories.md index c6fbccf..62b70a3 100644 --- a/docs/remote_repositories.md +++ b/docs/remote_repositories.md @@ -116,7 +116,7 @@ Type "help", "copyright", "credits" or "license" for more information. ### metaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis -Here is an example how to use the metaWRAP pipeline with via the docker container - [installation instructions](https://github.com/bxlab/metaWRAP#docker-installation). +Here is an example how to use the metaWRAP pipeline from the docker container - [installation instructions](https://github.com/bxlab/metaWRAP#docker-installation). ``` $ docker pull quay.io/biocontainers/metawrap:1.2--1 @@ -131,8 +131,9 @@ INFO: Starting build... Getting image source signatures ... ``` +This will bring the docker container locally and covert it to Singularity format. -One can start the container and use it interactively. +Then, one can start the container and use it interactively. ``` $ ./metawrap_1.2--1.sif @@ -142,7 +143,7 @@ Singularity> metawrap --version metaWRAP v=1.2 ``` -but to run the tool from the command line (as you would use it in scripts) we need to add the call for the tool from Singularity. +To run the tool from the command line (as you would use it in scripts) we need to add the call for the tool from Singularity. Original commad in the cript: $ **metawrap** binning -o Lanna-straw_initial_binning_concoct -t 20 -a /proj/test/megahit_ass_Lanna-straw/final.contigs.fa --concoct --run-checkm /proj/test/Lanna-straw_reads_trimmed/*.fastq