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Adding LRT test #176
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Hi @wxicu, thanks for the suggestion! It's in our TODO list :) we hope to open a PR in the next few weeks |
This was referenced Oct 17, 2023
Hi, thanks for all your work with PyDESeq2. Any idea when the LRT changes are going to be pushed to production? |
Hi @bengroves, unfortunately the LRT PR (#178) isn't currently being developed, but we'd be happy to help anyone who'd like to revive it or create a new one |
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Hey, thanks for developing pydeseq2!
I used to perform DGE analysis with edgeR and happy now to see there is a python package. I am comparing the result of pydeseq2 and edger on the same dataset and I see there is a large difference. Is it possible to add likelihood ratio test like in deseq2 with
dds = DESeq(dds, test="LRT")
in the future? Thanks a lot!The text was updated successfully, but these errors were encountered: