{"payload":{"pageCount":5,"repositories":[{"type":"Public","name":"OCNC_tutorial_optinist","owner":"oist","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-16T08:12:20.085Z"}},{"type":"Public","name":"plessy_pairwiseGenomeComparison","owner":"oist","isFork":false,"description":"Draft workflow for pairwise genome comparison","allTopics":["nextflow","comparative-genomics","whole-genome-alignment","bioinformatics","genomics"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":4,"issueCount":7,"starsCount":4,"forksCount":3,"license":null,"participation":[0,0,0,0,0,0,0,0,0,6,0,0,1,1,0,0,3,0,0,0,0,0,0,0,0,17,3,0,0,0,0,7,0,2,1,1,1,5,2,0,0,0,0,0,0,1,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T05:42:31.863Z"}},{"type":"Public","name":"VisualStimulation","owner":"oist","isFork":false,"description":"matlab gui for vstim with psychophysics toolbox","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T07:51:30.511Z"}},{"type":"Public","name":"replifactory_v7","owner":"oist","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T07:42:06.364Z"}},{"type":"Public","name":"optinist","owner":"oist","isFork":false,"description":"calcium imaging pipeline tool","allTopics":["neuroscience","calcium-imaging"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":8,"issueCount":50,"starsCount":33,"forksCount":12,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T00:59:04.849Z"}},{"type":"Public","name":"BrainComputation","owner":"oist","isFork":false,"description":"Brain Computation: A Hands-on Guidebook","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-06T04:27:00.695Z"}},{"type":"Public","name":"Oikopleuradioica_genomeannotation","owner":"oist","isFork":false,"description":"Genome annotation of Oikopleura dioica from different geographical locations","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-05T06:37:37.482Z"}},{"type":"Public","name":"BioinfoUgrp","owner":"oist","isFork":false,"description":"OIST Bioinfo user group","allTopics":["hpc","oist","bioinformatics"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":7,"forksCount":2,"license":null,"participation":[5,8,10,1,2,0,4,0,2,1,2,0,0,0,0,0,1,0,0,0,3,0,2,0,0,1,1,0,0,1,1,1,1,1,1,0,0,1,0,1,0,0,1,0,1,0,4,0,1,3,3,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T01:08:26.356Z"}},{"type":"Public","name":"LuscombeU-CAGE_libraries","owner":"oist","isFork":false,"description":"Quality control and processing of CAGE libraries","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T06:21:05.621Z"}},{"type":"Public archive","name":"LaTeX-template-phd-thesis-proposal","owner":"oist","isFork":false,"description":"LaTeX Template for OIST PhD Thesis Proposal","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T06:43:33.394Z"}},{"type":"Public archive","name":"LaTeX-template-phd-thesis","owner":"oist","isFork":false,"description":"LaTeX Template for OIST Thesis","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T06:41:02.577Z"}},{"type":"Public","name":"plessy_nf_GenomicBreaks","owner":"oist","isFork":false,"description":"Draft Nextflow pipeline to convert alignment files and extract basic stats.","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T09:33:42.295Z"}},{"type":"Public","name":"plessy_oikgenomes_drat","owner":"oist","isFork":false,"description":"Drat repository for hosting oik BSgenome packages","allTopics":["r","bsgenome","oikopleura"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T05:36:39.446Z"}},{"type":"Public","name":"gs_admissions_web_redirect","owner":"oist","isFork":false,"description":"Redirect page from old admissions to new containerized admissions page ","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-08T04:47:04.395Z"}},{"type":"Public","name":"GenomicBreaks","owner":"oist","isFork":false,"description":"Pairwise Alignment Breakpoint Analysis","allTopics":["comparative-genomics","r"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":17,"starsCount":4,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-26T06:30:30.011Z"}},{"type":"Public","name":"BioinfoUgrp_DebianMed_Images","owner":"oist","isFork":false,"description":"GitHub actions workflow to create Debian Med images for OISTs bioinformatics user group.","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T07:19:41.888Z"}},{"type":"Public","name":"topcorneR","owner":"oist","isFork":false,"description":"Plan and analyse large-scale liquid transfers","allTopics":["r","high-throughput-screening","liquid-handling"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":5,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-19T09:20:48.573Z"}},{"type":"Public","name":"LuscombeU_last-flask","owner":"oist","isFork":false,"description":"Remotely run our LAST Nextflow pipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-08T07:10:08.033Z"}},{"type":"Public","name":"LuscombeU_OikScrambling","owner":"oist","isFork":false,"description":"Scrambling paper analysis in R","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":3,"issueCount":0,"starsCount":2,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-19T06:28:21.275Z"}},{"type":"Public","name":"Chakraborty_GoCD_Configs","owner":"oist","isFork":false,"description":"Repository containing pipeline configuration files in YAML format for GoCD server configuration.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T05:49:57.223Z"}},{"type":"Public","name":"SallanU_impressiontray","owner":"oist","isFork":false,"description":"Dental impression tray for animals (Wibisana et al., 2023)","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-19T14:45:58.076Z"}},{"type":"Public","name":"iSciComp","owner":"oist","isFork":false,"description":"JupyterBook: Introduction to Scientific Computation ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-04T18:42:59.224Z"}},{"type":"Public","name":"ChatGptGuessNumber","owner":"oist","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-11T11:45:15.025Z"}},{"type":"Public","name":"treeOT","owner":"oist","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-05T21:08:44.628Z"}},{"type":"Public","name":"rate_limits","owner":"oist","isFork":false,"description":"Fork of drupal/rate_limits with Drupal 10 compatibility","allTopics":[],"primaryLanguage":{"name":"PHP","color":"#4F5D95"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-01T01:03:15.094Z"}},{"type":"Public","name":"cpr-samlauth-role-map","owner":"oist","isFork":false,"description":"Role mapping feature for Drupal 8 SAML Authentication module","allTopics":[],"primaryLanguage":{"name":"PHP","color":"#4F5D95"},"pullRequestCount":0,"issueCount":4,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-24T00:42:46.074Z"}},{"type":"Public","name":"public_preview","owner":"oist","isFork":false,"description":"Fork of drupal/public_preview with Drupal 10 compatibility","allTopics":[],"primaryLanguage":{"name":"PHP","color":"#4F5D95"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-19T05:30:49.003Z"}},{"type":"Public","name":"zen","owner":"oist","isFork":false,"description":"Fork of drupal/zen with Drupal 10 compatibility","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-18T06:18:19.449Z"}},{"type":"Public","name":"TER-UCE-DB","owner":"oist","isFork":true,"description":"The Termite UCE Database. Centralization of termite UCE data and assignation of unique identification code.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-17T05:07:29.623Z"}},{"type":"Public","name":"plessy_CAGEscan_Nextflow","owner":"oist","isFork":false,"description":"NextFlow pipeline for CAGEscan","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-12T05:56:29.505Z"}}],"repositoryCount":149,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}