{"payload":{"pageCount":11,"repositories":[{"type":"Public","name":"SpliceAI-lookup","owner":"broadinstitute","isFork":false,"description":"Website for checking SpliceAI and Pangolin scores:","allTopics":["pangolin","spliceai"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":7,"starsCount":17,"forksCount":6,"license":"MIT License","participation":[0,0,0,0,0,6,0,0,0,4,2,0,1,15,27,3,4,2,2,3,0,0,0,0,0,5,6,0,0,0,0,0,3,0,1,0,0,0,16,35,6,8,1,0,0,0,2,0,0,0,0,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T02:25:15.122Z"}},{"type":"Public","name":"genetic-prevalence-estimator","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":41,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T20:20:58.450Z"}},{"type":"Public","name":"gatk-sv","owner":"broadinstitute","isFork":false,"description":"A structural variation pipeline for short-read sequencing","allTopics":["structural-variation","structural-variants","bioinformatics","genomics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":23,"issueCount":94,"starsCount":159,"forksCount":71,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T19:49:10.287Z"}},{"type":"Public","name":"seqr-helm","owner":"broadinstitute","isFork":false,"description":"Helm charts for the seqr project","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":1,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T15:18:25.589Z"}},{"type":"Public","name":"seqr","owner":"broadinstitute","isFork":false,"description":" web-based analysis tool for rare disease genomics","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":57,"starsCount":169,"forksCount":89,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T15:55:34.690Z"}},{"type":"Public","name":"genetics-kp-dev","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":27,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T16:01:12.112Z"}},{"type":"Public","name":"bits-appengine","owner":"broadinstitute","isFork":false,"description":"BITS AppEngine Python Package","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T10:42:12.859Z"}},{"type":"Public","name":"seqr-loading-pipelines","owner":"broadinstitute","isFork":false,"description":"hail-based pipelines for annotating variant callsets and exporting them to elasticsearch","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":20,"starsCount":21,"forksCount":20,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T02:01:03.705Z"}},{"type":"Public","name":"molecular-data-provider","owner":"broadinstitute","isFork":false,"description":"Molecular Data Provider","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":4,"starsCount":10,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T20:26:04.383Z"}},{"type":"Public","name":"ega_submissions","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T20:06:12.089Z"}},{"type":"Public","name":"dig-bioindex","owner":"broadinstitute","isFork":false,"description":"BIO index for genetic records stored in S3 and FastAPI server.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":6,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T18:00:30.305Z"}},{"type":"Public","name":"CellCap","owner":"broadinstitute","isFork":false,"description":"Interpret perturbation responses from scRNA-seq perturbation experiments","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":16,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T17:00:40.455Z"}},{"type":"Public","name":"amplicon_taxonomic_identification","owner":"broadinstitute","isFork":false,"description":"Amplicon taxonomic identification in the Neafsey lab","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T15:54:19.568Z"}},{"type":"Public","name":"hermitcrab","owner":"broadinstitute","isFork":false,"description":"Provision GCP instances along with PD for interactive development with visual studio code","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T12:55:40.938Z"}},{"type":"Public","name":"gnomad_methods","owner":"broadinstitute","isFork":false,"description":"Hail helper functions for the gnomAD project and Translational Genomics Group","allTopics":["genomics","genomes","exomes","hail"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":11,"starsCount":82,"forksCount":26,"license":"MIT License","participation":[7,28,21,16,2,0,11,2,27,3,28,25,12,28,28,16,23,49,31,39,41,27,13,6,0,1,4,15,23,3,23,22,53,9,2,11,0,15,14,4,4,6,14,16,9,20,22,2,14,9,9,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T20:05:55.118Z"}},{"type":"Public","name":"bibt-slack","owner":"broadinstitute","isFork":false,"description":"Broad Institute BITS Blue Team repository for bibt-slack PyPI library.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T10:45:32.889Z"}},{"type":"Public","name":"warp-tools","owner":"broadinstitute","isFork":false,"description":"This repository contains all containers that WARP uses.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":1,"starsCount":9,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T12:27:49.015Z"}},{"type":"Public","name":"TerraWorkflows","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T15:09:01.933Z"}},{"type":"Public","name":"dsp-terra-workspaces-scripts","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-22T15:35:05.359Z"}},{"type":"Public","name":"bibt-qualys","owner":"broadinstitute","isFork":false,"description":"Broad Institute BITS Blue Team repository for bibt-qualys PyPI library.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T10:21:47.059Z"}},{"type":"Public","name":"bibt-gcp-bq","owner":"broadinstitute","isFork":false,"description":"Broad Institute BITS Blue Team repository for bibt-gcp-bq PyPI library.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-22T10:18:33.342Z"}},{"type":"Public","name":"eQTL_annotations","owner":"broadinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T20:12:05.075Z"}},{"type":"Public","name":"dsp-reusable-workflows","owner":"broadinstitute","isFork":false,"description":"publicly available reusable workflows","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T19:51:42.436Z"}},{"type":"Public","name":"dsp-appsec-infrastructure-apps","owner":"broadinstitute","isFork":false,"description":"This repository hosts DSP AppSec internal infrastructure apps deployed in GKE. ","allTopics":["application-security","appsec","security-scanner","secure-development","security-automation","security-tools","devsecops","security-scan","appsecurity","appsec-tools","cis-scanner","zap-scanner","security"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":6,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T18:39:38.180Z"}},{"type":"Public","name":"firecloud-tools","owner":"broadinstitute","isFork":false,"description":"Tools for use with FireCloud","allTopics":["docker","firecloud"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":3,"starsCount":10,"forksCount":7,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T17:05:05.776Z"}},{"type":"Public","name":"tensorqtl","owner":"broadinstitute","isFork":false,"description":"Ultrafast GPU-enabled QTL mapper","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":26,"starsCount":145,"forksCount":46,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,7,2,2,1,3,2,1,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,0,0,1,0,0,0,0,0,3,0,4,0,2,0,0,0,0,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T15:05:27.450Z"}},{"type":"Public","name":"python-sudoers","owner":"broadinstitute","isFork":false,"description":"Python library for parsing a Linux sudoers file","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":2,"starsCount":6,"forksCount":7,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T14:53:10.497Z"}},{"type":"Public","name":"jump-profiling-recipe","owner":"broadinstitute","isFork":false,"description":"Workflow for processing cpg0016-jump profiles ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":1,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T20:04:09.166Z"}},{"type":"Public","name":"bibt-gcp-asset","owner":"broadinstitute","isFork":false,"description":"Broad Institute BITS Blue Team repository for bibt-gcp-asset PyPI library.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T10:47:07.307Z"}},{"type":"Public","name":"tgg_methods","owner":"broadinstitute","isFork":false,"description":"Repo for miscellaneous methods developed by the methods group that don't fit anywhere else","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":11,"starsCount":4,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T13:44:44.717Z"}}],"repositoryCount":330,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}