Failed to activate the Hydrogen package #2152

pboistier · 2022-04-27T20:48:00Z

Prerequisites

Put an X between the brackets on this line if you have done all of the following:
- Reproduced the problem in Safe Mode: https://flight-manual.atom.io/hacking-atom/sections/debugging/#using-safe-mode
- Followed all applicable steps in the debugging guide: https://flight-manual.atom.io/hacking-atom/sections/debugging/
- Checked the FAQs on the message board for common solutions: https://discuss.atom.io/c/faq
- Checked that your issue isn't already filed: https://github.com/issues?q=is%3Aissue+user%3Aatom
- Checked that there is not already an Atom package that provides the described functionality: https://atom.io/packages

Description

Hi ! I was never able to run Hydrogen, tried a lot but can't manage to find a solution. Have you got any ideas ? Thank you

Versions

Atom: 1.61.0-beta0 x64
Electron: 11.4.12
OS: linux 5.15.32-213.current
Thrown From: Hydrogen package 2.16.3

Stack Trace

Failed to activate the Hydrogen package

At No native build was found for platform=linux arch=x64 runtime=electron abi=85 uv=1 libc=glibc node=12.18.3 electron=11.4.12
    loaded from: /home/pierre/.atom/packages/Hydrogen/node_modules/@aminya/zeromq


Error: No native build was found for platform=linux arch=x64 runtime=electron abi=85 uv=1 libc=glibc node=12.18.3 electron=11.4.12
    loaded from: /home/pierre/.atom/packages/Hydrogen/node_modules/@aminya/zeromq

    at Function.load.path (/packages/Hydrogen/node_modules/node-gyp-build/index.js:60:9)
    at load (/packages/Hydrogen/node_modules/node-gyp-build/index.js:22:30)
    at /packages/Hydrogen/node_modules/@aminya/zeromq/binding.js:1:198)
    at /packages/Hydrogen/node_modules/@aminya/zeromq/binding.js:3:3)
    at Module.get_Module._compile (/usr/share/atom/resources/app/static/<embedded>:11:149913)
    at Object.value [as .js] (/usr/share/atom/resources/app/static/<embedded>:11:153507)
    at Module.load (internal/modules/cjs/loader.js:992:32)
    at Module._load (internal/modules/cjs/loader.js:885:14)
    at Function.f._load (electron/js2c/asar_bundle.js:5:12633)
    at Module.require (/app.asar/static/index.js:72:46)
    at require (/usr/share/atom/resources/app/static/<embedded>:11:149229)
    at /packages/Hydrogen/node_modules/@aminya/zeromq/lib/index.js:6:11)
    at /packages/Hydrogen/node_modules/@aminya/zeromq/lib/index.js:857:3)
    at Module.get_Module._compile (/usr/share/atom/resources/app/static/<embedded>:11:149913)
    at Object.value [as .js] (/usr/share/atom/resources/app/static/<embedded>:11:153507)
    at Module.load (internal/modules/cjs/loader.js:992:32)
    at Module._load (internal/modules/cjs/loader.js:885:14)
    at Function.f._load (electron/js2c/asar_bundle.js:5:12633)
    at Module.require (/app.asar/static/index.js:72:46)
    at require (/usr/share/atom/resources/app/static/<embedded>:11:149229)
    at /packages/Hydrogen/node_modules/@aminya/zeromq/index.js:2:18)
    at /packages/Hydrogen/node_modules/@aminya/zeromq/index.js:3:3)
    at Module.get_Module._compile (/usr/share/atom/resources/app/static/<embedded>:11:149913)
    at Object.value [as .js] (/usr/share/atom/resources/app/static/<embedded>:11:153507)
    at Module.load (internal/modules/cjs/loader.js:992:32)
    at Module._load (internal/modules/cjs/loader.js:885:14)
    at Function.f._load (electron/js2c/asar_bundle.js:5:12633)
    at Module.require (/app.asar/static/index.js:72:46)
    at require (/usr/share/atom/resources/app/static/<embedded>:11:149229)
    at /packages/Hydrogen/node_modules/@aminya/jmp/index.js:37:11)
    at /packages/Hydrogen/node_modules/@aminya/jmp/index.js:451:3)
    at Module.get_Module._compile (/usr/share/atom/resources/app/static/<embedded>:11:149913)
    at Object.value [as .js] (/usr/share/atom/resources/app/static/<embedded>:11:153507)
    at Module.load (internal/modules/cjs/loader.js:992:32)
    at Module._load (internal/modules/cjs/loader.js:885:14)
    at Function.f._load (electron/js2c/asar_bundle.js:5:12633)
    at Module.require (/app.asar/static/index.js:72:46)
    at require (/usr/share/atom/resources/app/static/<embedded>:11:149229)
    at /packages/Hydrogen/dist/zmq-kernel.js:7:15)
    at /packages/Hydrogen/dist/zmq-kernel.js:325:3)
    at Module.get_Module._compile (/usr/share/atom/resources/app/static/<embedded>:11:149913)
    at Object.value [as .js] (/usr/share/atom/resources/app/static/<embedded>:11:153507)
    at Module.load (internal/modules/cjs/loader.js:992:32)
    at Module._load (internal/modules/cjs/loader.js:885:14)
    at Function.f._load (electron/js2c/asar_bundle.js:5:12633)
    at Module.require (/app.asar/static/index.js:72:46)
    at require (/usr/share/atom/resources/app/static/<embedded>:11:149229)
    at /packages/Hydrogen/dist/main.js:34:38)
    at /packages/Hydrogen/dist/main.js:456:3)
    at Module.get_Module._compile (/usr/share/atom/resources/app/static/<embedded>:11:149913)
    at Object.value [as .js] (/usr/share/atom/resources/app/static/<embedded>:11:153507)
    at Module.load (internal/modules/cjs/loader.js:992:32)
    at Module._load (internal/modules/cjs/loader.js:885:14)
    at Function.f._load (electron/js2c/asar_bundle.js:5:12633)
    at Module.require (/app.asar/static/index.js:72:46)
    at require (internal/modules/cjs/helpers.js:72:18)
    at customRequire (/usr/share/atom/resources/app/static/<embedded>:1:756277)
    at requireModule (/usr/share/atom/resources/app/static/<embedded>:14:1205795)
    at Package.requireMainModule (/usr/share/atom/resources/app/static/<embedded>:11:3184054)
    at Package.activateNow (/usr/share/atom/resources/app/static/<embedded>:11:3172053)
    at /usr/share/atom/resources/app/static/<embedded>:14:1879
    at Function.simpleDispatch (/usr/share/atom/resources/app/static/<embedded>:11:1187641)
    at Emitter.emit (/usr/share/atom/resources/app/static/<embedded>:11:1189082)
    at CommandRegistry.handleCommandEvent (/usr/share/atom/resources/app/static/<embedded>:11:352326)
    at KeymapManager.dispatchCommandEvent (/usr/share/atom/resources/app/static/<embedded>:11:1228444)
    at KeymapManager.handleKeyboardEvent (/usr/share/atom/resources/app/static/<embedded>:11:1224578)
    at WindowEventHandler.handleDocumentKeyEvent (/usr/share/atom/resources/app/static/<embedded>:11:286682)

Commands

     -7:28.2.0 hydrogen:run (input.hidden-input)

Non-Core Packages

atom-clock 0.1.18 
cell-navigation 0.1.0 
data-explorer 0.7.0 
file-icons 2.1.47 
Hydrogen 2.16.3 
hydrogen-cell-separator 0.4.1 
hydrogen-launcher 1.2.2 
hydrogen-python 0.0.8 
language-babel 2.85.0 
markdown-cell-highlight 1.2.0 
project-manager 3.3.8 
teletype 0.13.4

The text was updated successfully, but these errors were encountered:

Ermes-28 · 2022-11-18T21:34:06Z

same problem, did u fix it?

vandertilt · 2022-11-20T21:48:21Z

Same issue here, any ideas?
For me the issue appeared after Hydrogen upgrade from 2.15.3 ->2.16.3
Unfortunately the issue remains after rollback to 2.15.3

antonscharton · 2022-11-21T07:03:24Z

Same here, I managed to fix it once by uninstalling and reinstalling atom again but now the issue is still present

sandrofsousa · 2022-11-21T10:53:14Z

Same here, it happened immediately after updating to atom 1.63.0 so the update is most likely responsible for breaking things.

Atom    : 1.63.0
Electron: 11.5.0
Chrome  : 87.0.4280.141
Node    : 12.18.3
macos: 12.6.1 (21G217)
hydrogen: 2.16.3

mariorossi1989 · 2022-11-21T13:47:08Z

Same here, it happened immediately after updating to atom 1.63.0 so the update is most likely responsible for breaking things.
Atom    : 1.63.0
Electron: 11.5.0
Chrome  : 87.0.4280.141
Node    : 12.18.3
macos: 12.6.1 (21G217)
hydrogen: 2.16.3

Same for me as well.

ehsan27770 · 2022-11-21T17:24:29Z

same for me:

Atom    : 1.63.0
Electron: 11.5.0
Chrome  : 107.0.5304.110
Node    : 12.18.3
macos: 13.0.1 
hydrogen: 2.16.3

Camilonfc · 2022-11-21T19:10:27Z

same problem, did u fix it?

Camilonfc · 2022-11-21T20:42:34Z

Hello @aminya, any news, how to solve this problem? thanks in advance.

danliu09 · 2022-11-21T21:01:25Z

the issue. any solution recommended? It was running OK this morning but suddenly not working

haleyk · 2022-11-21T21:20:37Z

same, having this problem appear between this morning and afternoon.

aminya · 2022-11-21T21:36:48Z

Atom is going to be sunsetted soon. It is not possible to publish new packages anymore. If you have your Atom working offline locally, it should continue to work, but the servers are down.

You can directly download the code from here, copy it to ~/.atom/packages/hydrogen and run apm install at the root
https://github.com/nteract/hydrogen/archive/refs/tags/v2.16.4.zip

The changes are here:
#2161

As someone who spent several years developing many of the IDE features for Atom, my recommendation is to use an alternative editor that has an active community around it.
VsCode, Jetbrains IDEs like Pycharm, Webstorm, Clion, and Fleet to name a few.
These have huge communities with officially supported plugins. Most of the programming languages and developer tools have official extensions for VSCode and Jetbrains.
See my recommendation about the Hydrogen alternative:
#2155 (comment)

vandertilt · 2022-11-22T18:09:06Z

Thanks alot @aminya!
Atom + Hydrogen is an uncontested winner for anyone wrangling data!
Guess I'll have to make do with moonshine for now..
Cheers!

camall3n · 2022-11-24T19:03:32Z

@aminya What does "run apm install at the root" mean? Which root?

aminya · 2022-11-24T20:11:42Z

At ~/.atom/packages/hydrogen

rubick1896 · 2022-11-25T13:47:25Z

@aminya Can you give instructions on how to install the new package on Windows?

aminya · 2022-11-25T18:08:20Z

The same instructions for all platforms

ekkal · 2022-12-18T21:31:12Z

@aminya What does "run apm install at the root" mean? Which root?

Were any of your able to install Hydrogen patch successfully?
Agree to @vandertilt that Atom shines and especially so for someone working with data.

ekkal · 2022-12-19T00:01:07Z

@aminya What does "run apm install at the root" mean? Which root?

Were any of your able to install Hydrogen patch successfully? Agree to @vandertilt that Atom shines and especially so for someone working with data.

It indeed worked once the zip is extracted and after issuing the command apm install . Thanks @aminya .

I'm looking forward to using VSCode provided they have light table implementation for data viewing:
https://nteract.gitbooks.io/hydrogen/content/

pboistier added the bug 🐛 For unexpected issues label Apr 27, 2022

This was referenced Nov 21, 2022

Uncaught error: no native build was found for platforms #2157

Closed

Uncaught Error: No native build was found for platform=darwin arch=x64 runtime=electron abi=85 uv... #2160

Closed

fix: support Electron 11 #2161

Merged

aminya closed this as completed in #2161 Nov 21, 2022

aminya pinned this issue Nov 21, 2022

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Failed to activate the Hydrogen package #2152

Failed to activate the Hydrogen package #2152

pboistier commented Apr 27, 2022 •

edited

Ermes-28 commented Nov 18, 2022

vandertilt commented Nov 20, 2022 •

edited

antonscharton commented Nov 21, 2022

sandrofsousa commented Nov 21, 2022 •

edited

mariorossi1989 commented Nov 21, 2022

ehsan27770 commented Nov 21, 2022

Camilonfc commented Nov 21, 2022

Camilonfc commented Nov 21, 2022

danliu09 commented Nov 21, 2022 •

edited

haleyk commented Nov 21, 2022

aminya commented Nov 21, 2022 •

edited

vandertilt commented Nov 22, 2022

camall3n commented Nov 24, 2022

aminya commented Nov 24, 2022

rubick1896 commented Nov 25, 2022

aminya commented Nov 25, 2022

ekkal commented Dec 18, 2022

ekkal commented Dec 19, 2022

Failed to activate the Hydrogen package #2152

Failed to activate the Hydrogen package #2152

Comments

pboistier commented Apr 27, 2022 • edited

Prerequisites

Description

Versions

Stack Trace

Commands

Non-Core Packages

Ermes-28 commented Nov 18, 2022

vandertilt commented Nov 20, 2022 • edited

antonscharton commented Nov 21, 2022

sandrofsousa commented Nov 21, 2022 • edited

mariorossi1989 commented Nov 21, 2022

ehsan27770 commented Nov 21, 2022

Camilonfc commented Nov 21, 2022

Camilonfc commented Nov 21, 2022

danliu09 commented Nov 21, 2022 • edited

haleyk commented Nov 21, 2022

aminya commented Nov 21, 2022 • edited

vandertilt commented Nov 22, 2022

camall3n commented Nov 24, 2022

aminya commented Nov 24, 2022

rubick1896 commented Nov 25, 2022

aminya commented Nov 25, 2022

ekkal commented Dec 18, 2022

ekkal commented Dec 19, 2022

pboistier commented Apr 27, 2022 •

edited

vandertilt commented Nov 20, 2022 •

edited

sandrofsousa commented Nov 21, 2022 •

edited

danliu09 commented Nov 21, 2022 •

edited

aminya commented Nov 21, 2022 •

edited