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Mismatch with new DNAScope ML model format #568
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Yeah, we need to fix that. In the mean time, you can unpack the bundle using EDIT: Your fix is also fine. |
Didn't know that, thanks! |
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Description of the bug
The Sentieon DNAScope takes a flag
--model
which is expected to point to a file with a pre-trained model.In their latest updates, the models are provided in
.bundle
format. Here the model is accessed as such:(More info in issue here: Sentieon/sentieon-models#4)
But, the file is actually named
models.bundle
.So if you point to the
models.bundle
directly, the Sentieon process does currently not find the file. If pointing directly todnascope.model
, Nextflow will detect it as missing and will not run.My temporary solution is to update the Sentieon DNA-scope module code as such:
Command used and terminal output
No response
Relevant files
No response
System information
No response
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