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nextflow.script.ScriptBinding.check_max() #335

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fgualdr opened this issue Feb 9, 2023 · 1 comment
Open

nextflow.script.ScriptBinding.check_max() #335

fgualdr opened this issue Feb 9, 2023 · 1 comment
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@fgualdr
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fgualdr commented Feb 9, 2023

Description of the bug

Hello,

I am trying to run the workflow but this issue occurs:
I don't understand what the line "No signature of method: nextflow.script.ScriptBinding.check_max() is applicable for argument types: () values: []" means.
Thanks a lot

Francesco

Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:PREPARE_GENOME:GTF2BED (genes.gtf)'

Caused by:
No signature of method: nextflow.script.ScriptBinding.check_max() is applicable for argument types: () values: []

Source block:
"""
gtf2bed \
$gtf \
> ${gtf.baseName}.bed

  cat <<-END_VERSIONS > versions.yml
  "${task.process}":
      perl: \$(echo \$(perl --version 2>&1) | sed 's/.*v\\(.*\\)) built.*/\\1/')
  END_VERSIONS
  """

Work dir:

Command used and terminal output

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@fgualdr fgualdr added the bug Something isn't working label Feb 9, 2023
@JoseEspinosa
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Sorry for the late response but we have seen similar stuff when trying to redefine the computational resources in an ad-hoc config see for instance here. If you still need help just post it back here.

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