-
Notifications
You must be signed in to change notification settings - Fork 59
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Summary of errors in Nextclade #1045
Comments
@corneliusroemer |
Hi @corneliusroemer just to highlight something went wrong with the last nextclade updates:
BL.1.3 : it is defined by S:F490L and it is around 27 sequences but the nextclade BL.1.3 query on covspectrum finds 48 sequences and just a tiny bit with S:F490L
Nextclade for BL.1.3:
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?nextcladePangoLineage=BL.1.3
Real BL.1.3:
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?variantQuery=nextcladePangoLineage%3ABA.2.75*+%26+S%3A346T+%26+S%3A574v+%26+S%3A490L
BN.3: it is defined by S:N450D and it is around 24 sequences but the nextclade BN.3 query on covspectrum finds 43 sequences and just a tiny bit with S:N450D
Nextclade for BN.3:
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?nextcladePangoLineage=BN.3
Real BN.3 (with S:N450D):
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?aaMutations=S%3AN450D&nextcladePangoLineage=BN.3&
BA.4.6.2: it is defined by S:V445A and it is around 75 sequences but the nextclade BA.4.6.2 query on covspectrum finds 146 sequences and just a tiny bit with S:V445A
Nextclade for BA.4.6.2:
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?nextcladePangoLineage=BA.4.6.2
Real BA.4.6.2 (with S:V445A):
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?aaMutations=S%3AV445A&nextcladePangoLineage=BA.4.6.2&
BQ.1.18: it is defined by S:Y144- and it is around 1194 sequences but the nextclade BQ.1.18 query on covspectrum finds 1795 sequences and just a tiny bit with S:Y144-
Nextclade for BQ.1.18:
https://cov-spectrum.org/explore/World/AllSamples/AllTimes/variants?nextcladePangoLineage=BQ.1.18&
Real BQ.1.18 (with S:Y144-):
https://cov-spectrum.org/explore/World/AllSamples/AllTimes/variants?aaMutations=S%3A144-&nextcladePangoLineage=BQ.1.18&
BQ.1.28: it is defined by ins22303TCAAGATGGATG, C25096T and it is around 317 sequences but the nextclade BQ.1.28 query on covspectrum finds 3839 sequences and just a tiny bit with C25096T
Nextclade for BQ.1.28:
https://cov-spectrum.org/explore/World/AllSamples/AllTimes/variants?nextcladePangoLineage=BQ.1.28&
Real BQ.1.28 (with C25096T):
https://cov-spectrum.org/explore/World/AllSamples/AllTimes/variants?nucMutations=C25096T&nextcladePangoLineage=BQ.1.28*&
The text was updated successfully, but these errors were encountered: