You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am running graphbin v 1.7.1 and python version 3.10.13
First, I was unable to get the python support scripts to work so I renamed all of my files to make naming consistent and made the csv file with custom scripts.
I get this error: 2024-02-12 12:28:23,452 - ERROR - Please make sure to provide the path to the contigs.paths file. 2024-02-12 12:28:23,453 - INFO - Exiting GraphBin... Bye...!
My understanding was that this was only for spades assemblies...
The text was updated successfully, but these errors were encountered:
Hello,
I am running graphbin v 1.7.1 and python version 3.10.13
First, I was unable to get the python support scripts to work so I renamed all of my files to make naming consistent and made the csv file with custom scripts.
When I tried to run the following code:
graphbin --contigs /home/ejunkins/LS01_hifi_coveragebin/LS01_001_assembly_renamed_edges.fasta --binned /home/ejunkins/LS01_hifi_coveragebin/bins/001/contignames/edges/LS01_001_all_edges_graphbin.csv --graph /home/ejunkins/jgi_assemblygraphs/NGXTG/flye/assembly_graph.gfa --output /home/ejunkins/LS01_hifi_coveragebin/bins/001/graphbin_out --prefix graphbin_metabat2_LS01_001_bin_with_cov --assembler flye
I get this error:
2024-02-12 12:28:23,452 - ERROR - Please make sure to provide the path to the contigs.paths file. 2024-02-12 12:28:23,453 - INFO - Exiting GraphBin... Bye...!
My understanding was that this was only for spades assemblies...
The text was updated successfully, but these errors were encountered: