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Automatic Protonation States via PropKa #453

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fgrunewald opened this issue Aug 26, 2022 · 3 comments
Open

Automatic Protonation States via PropKa #453

fgrunewald opened this issue Aug 26, 2022 · 3 comments
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easy One banana problem enhancement hacktoberfest Issue suitably scoped for hacktoberfest and other external contributors

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@fgrunewald
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Apparently the popular propka group has a functional python package. We could leverage this to automatically set pronation states in martinize. https://github.com/jensengroup/propka

@pckroon
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pckroon commented Aug 29, 2022

Cool, excellent idea. We need to be sure to add the appropriate citation if we implement a Processor for this.

@fgrunewald
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@pckroon for sure. I was thinking this could be a useful hacktoberfest task also?

@pckroon
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pckroon commented Aug 29, 2022

Great plan. I might pick it up myself in October, if no-one else claims it.

@pckroon pckroon added enhancement easy One banana problem labels Aug 29, 2022
@fgrunewald fgrunewald added the hacktoberfest Issue suitably scoped for hacktoberfest and other external contributors label Oct 3, 2022
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Labels
easy One banana problem enhancement hacktoberfest Issue suitably scoped for hacktoberfest and other external contributors
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