-
Notifications
You must be signed in to change notification settings - Fork 398
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Command usage . #1120
Comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
I have bunch of Oxford long-read fastq files that I need to convert to sorted bam files and later assembly using stringtie. I ran the following command for conversion from fastq files to bam using snakemake:
Since I did not use the ax-splice option, I wantes to confirm that the files it output were raw long-read sorted files and not alternatively alignment files? It also said to use presets before any other option. I had the threads parameter first so did it produce the wrong output files?
Also, if I want to do a aplice analysis on my files using stringtie, I would be suing this command to convert my fastq files to bam files right?
The text was updated successfully, but these errors were encountered: