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Check if accessions has CDS? #203
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I just had this same question! I ended up doing it outside of The genbank or refseq Example url, eg for all genbank plant genomes: https://ftp.ncbi.nlm.nih.gov/genomes/genbank/plant/annotation_hashes.txt |
Hello,
I want to check if GCA accessions that I pulled from genbank have CDSs, before filtering further to see if I want to download. I used the commands
--formats cds-fasta
to only look at CDS and-n
to check rather than download. However, -n it returns all the GCAs I input, not just ones with CDS files.I want it to check if a CDS exists without downloading yet, is there a way to do this?
thanks,
Elinor
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