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Option for metadata file only #202
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Hi, maybe you figured this out. ncbi-genome-download creates a cache file, which contains the metadata you need.
it will then produce these lines in the helpfile:
So if you do a dry run, you will have the metadata file in the cache folder |
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First I want to thank you for this great tool!
I wanted to ask if there was an option to get the metadata file for a list of accessions without downloading the genomes. I would like to refine the number of genomes that I download based on their metadata.
I tried this command in an attempt to generate the
ALL_actino_accs_in_tree_metadata.txt
file:ncbi-genome-download --dry-run --section genbank --assembly-level all --assembly-accessions ALL_actino_accs_in_tree.txt --output-folder /Obesity_v2/actinobacteriota/anvio --metadata ALL_actino_accs_in_tree_metadata.txt --progress-bar --verbose bacteria
No file was generated but this was the output:
Please let me know if you would need any other information. Thanks!
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