How to preparing the data in order to run command line: python. mainHyperDenseNet.py

[tphankr]

Dear @josedolz,
My errors as following, please help me fix this error.

My the preparing the data:

And in each Training and Validation folder has : GT, T1, T1_IR, T2_FLAIR, and in each of these folders has GT.nii, T1.nii, T1_IR. nii, T2_FLAIR.nii.

Thank you, @josedolz very much.

[antdelmas]

Hi,
I am not sure but this is how I understand the dataset tree :

DataBase_nii
Training
T1
im1.nii
im2.nii
...
T2
im1.nii
im2.nii
...
GT
im1.nii
im2.nii
...
Validation
T1
im1.nii
im2.nii
...
T2
im1.nii
im2.nii
...
GT
im1.nii
im2.nii
...

[josedolz]

Hi, @antdelmas is right with the tree folders. In each image-type folder you should add all the images belonging to that modality. For example, if you have 10 training patients, the GT folder should have: im1.nii,img2.nii,...,img10.nii.

Jose