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Questions about result reproduction #19

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mydkzgj opened this issue Dec 31, 2021 · 0 comments
Open

Questions about result reproduction #19

mydkzgj opened this issue Dec 31, 2021 · 0 comments

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@mydkzgj
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mydkzgj commented Dec 31, 2021

Dear authors,

Excellent work! However, I have some problems with reproducing the results in your paper.

I follow your pipeline in README, and generate expected .bpseq, .ct, .prob for instances in PDB TS1 successfully. Then I binary the prob map with a threshold of 0.335, but I obtain metric like this: Pre-0.0402, Rec-0.1786, F1s-0.0619.

I also tried to convert the .ct file to a npy file to compute the metric, but it still kept very low values.

I am not sure whether I use the software correctly. I will really appreciate it If you can help me with the reproduction.
Thank you in advance!

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