From 4aee043b9b3402ff9ffcaf4fd7978e25f9ed0042 Mon Sep 17 00:00:00 2001
From: Vicky Daiya <37933641+vickydaiya@users.noreply.github.com>
Date: Thu, 30 Nov 2023 16:35:20 -0500
Subject: [PATCH] Update options-util.js

---
 steps/js/options-util.js | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/steps/js/options-util.js b/steps/js/options-util.js
index 66d80aa..55e7703 100644
--- a/steps/js/options-util.js
+++ b/steps/js/options-util.js
@@ -1,23 +1,23 @@
-var ALGORITHMS = ["azimuth", "celltypist", "popv"];
+var ALGORITHMS = ['azimuth', 'celltypist', 'popv'];
 
 function _find_algorithm(obj) {
-  for (var index = 0; index < ALGORITHMS.length; ++index) {
-    var name = ALGORITHMS[index];
-    if (typeof obj[name] === "object" && obj[name] !== null) {
-      return name;
+  for (var spec of obj.algorithms) {
+    for (var key of Object.keys(spec)) {
+      if (ALGORITHMS.includes(key)) {
+        return key;
+      }
     }
   }
-
-  return null;
+  return undefined;
 }
 
 function selectOutputDirectory(obj) {
-  return obj["directory"] || _find_algorithm(obj) || ".";
+  return obj['directory'] || _find_algorithm(obj) || '.';
 }
 
 function getSummarizeOptions(obj) {
   return {
-    annotationMethod: _find_algorithm(obj) || "unknown",
-    ...(obj.summarize ?? {})
+    annotationMethod: _find_algorithm(obj) || 'unknown',
+    ...(obj.algorithms.slice(-1)[0].summarize ?? {}),
   };
 }