Skip to content
This repository has been archived by the owner on Apr 12, 2024. It is now read-only.

Enhancing and operationalizing crosswalks for multiple reference datasets #1

Open
vikrantdeshpande09876 opened this issue Feb 8, 2023 · 0 comments
Assignees
Labels
documentation Improvements or additions to documentation good first issue Good for newcomers

Comments

@vikrantdeshpande09876
Copy link
Collaborator

Work completed up till now:

  1. Azimuth Kidney --> ASCTB Kidney v1.2:

Translations verified by Sanjay Jain and Ellen Q.

  1. Azimuth Lung HLCAv2 --> ASCTB Lung v1.2

Translations verified by Gloria Pryhuber

  1. Azimuth Heart --> ASCTB Heart v1.2

Translations verified by Marc Halushka

Next-steps:

a. Confirm with Katy and Ellen which crosswalks to focus on. Brief discussion was about Azimuth's other reference organs, CellTypist organs, and PopV/Tabula Sapiens organs.
b. Confirm if we need all organ-datasets from CellTypist and PopV/Tabula Sapiens mapped to ASCTB using this package?
c. Souradeep to operationalize this package into a data-pipeline with potential for CICD.
d. Future feature request - Add logic to also consider gene-expression profiles (biomarkers from query-dataset) mapped to ASCTB canonical markers, in order to make a more reliable cross-dataset translation mapping.

Picture1

@vikrantdeshpande09876 vikrantdeshpande09876 added documentation Improvements or additions to documentation good first issue Good for newcomers labels Feb 8, 2023
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
documentation Improvements or additions to documentation good first issue Good for newcomers
Projects
None yet
Development

No branches or pull requests

2 participants