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Notes from Berlin #143

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tallulandrews opened this issue Feb 9, 2018 · 1 comment
Open

Notes from Berlin #143

tallulandrews opened this issue Feb 9, 2018 · 1 comment

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@tallulandrews
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  1. spend more time on last 3 days and less on processing raw reads
    differential isoform analysis?
    minimum # reads per cell
    umi-counting with kallisto how to aggregate umis from transcripts to genes
    Practicals to add: slalom, RNA velocity, dropEST, UMI-tools, BEARscc, Libinorm, Cell-cycle analysis
    Drop-seq pipeline
    imputation: when is zero really a zero?
@liusyscholar
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Thanks for your advice ~!

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