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maxquant_mqpar attempts to read input file in cheetah templating #753

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mvdbeek opened this issue Mar 30, 2024 · 0 comments
Open

maxquant_mqpar attempts to read input file in cheetah templating #753

mvdbeek opened this issue Mar 30, 2024 · 0 comments

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@mvdbeek
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mvdbeek commented Mar 30, 2024

#set $mqpar_xml = open(str($mqpar_input), "r").read()

causes the entire input file to be loaded into memory inside the job handler process. This patterns also doesn't work when using pulsar or where the head node can't read dataset contents. This breaks execution on usegalaxy.org currently.

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