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Continuous integration with some testing? #35

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4 of 7 tasks
cmkobel opened this issue Sep 23, 2022 · 5 comments
Closed
4 of 7 tasks

Continuous integration with some testing? #35

cmkobel opened this issue Sep 23, 2022 · 5 comments
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high priority suggestion Ideas that doesn't necessarily need attention. testing Means that the issue is fixed, but more testing is needed to finally close the issue.
Milestone
📄 Publish scienti...

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@cmkobel
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cmkobel commented Sep 23, 2022 •
edited

Running a few tests.

  • Installing, both with conda and apptainer
  • Downloading databases.
  • Running a few tests and checking that everything is produced correctly:
    • Single sample
    • Handful of samples
  • Set up on thylakoid with cron
    • Enable error reporting through email or something..
@cmkobel cmkobel added the suggestion Ideas that doesn't necessarily need attention. label Sep 23, 2022
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cmkobel commented Oct 10, 2023

Should be integrated in the conda test. Right now it is just "asscom2 --dry-run" because I had some weird lock? problems on the azure server.

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cmkobel commented Feb 1, 2024 •
edited

As I have now experienced, downloads of some databases and also installation of some conda environments is unstable over time, so this really needs to be highly prioritized.

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cmkobel commented Feb 1, 2024 •
edited

Maybe setting this up on thylakoid through cron is a good option.

  • todo

@cmkobel cmkobel added this to the Publication milestone Feb 1, 2024
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cmkobel commented Feb 6, 2024

I have made a separate repository for this. Can't decide if it should be part of the ac2 repository, feels like it might become a bit bloated.

https://github.com/cmkobel/ac2-test-battery

@cmkobel cmkobel added the testing Means that the issue is fixed, but more testing is needed to finally close the issue. label Feb 6, 2024
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cmkobel commented Mar 23, 2024

It is going well with this but still haven't set up a cron job on Johans.

@cmkobel cmkobel closed this as completed Jun 11, 2024
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