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abacas.rb
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abacas.rb
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class Abacas < Formula
desc "Automatic contiguation of assembled sequences"
homepage "http://abacas.sourceforge.net/"
url "https://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl"
sha256 "0afee209a4f879987b320e2f882bc0eab540a7a712a81a5f01b9795d2749310d"
# doi "10.1093/bioinformatics/btp347"
# tag "bioinformatics"
bottle :unneeded
depends_on "mummer"
def install
inreplace "abacas.1.3.1.pl", "/usr/local/bin/perl", "/usr/bin/env perl"
bin.install "abacas.1.3.1.pl" => "abacas"
end
test do
assert_match "tblastx", shell_output("#{bin}/abacas -h 2>&1", 255)
end
end