From bc4b223f29e3d68aed1fbef2047b6db9e83d06fa Mon Sep 17 00:00:00 2001 From: Colleen Xu Date: Wed, 6 Mar 2024 10:13:30 -0800 Subject: [PATCH 1/3] chore: update smartapi yaml biolink-version --- docs/smartapi.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/smartapi.yaml b/docs/smartapi.yaml index 0e8523f..0bfa623 100644 --- a/docs/smartapi.yaml +++ b/docs/smartapi.yaml @@ -12,7 +12,7 @@ info: component: ARA team: - Exploring Agent - biolink-version: "3.5.0" + biolink-version: "4.1.6" infores: "infores:biothings-explorer" x-trapi: version: 1.4.0 From 60b4b019ff75542c760deac9e04d1ca6f5cb2fa4 Mon Sep 17 00:00:00 2001 From: Colleen Xu Date: Wed, 6 Mar 2024 17:24:17 -0800 Subject: [PATCH 2/3] feat: use overrides for apis affected by biolink-4/treats-refactor --- src/config/smartapi_overrides.json | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/config/smartapi_overrides.json b/src/config/smartapi_overrides.json index 3ecf519..347f40c 100644 --- a/src/config/smartapi_overrides.json +++ b/src/config/smartapi_overrides.json @@ -3,11 +3,11 @@ "only_overrides": false }, "apis": { - "671b45c0301c8624abbd26ae78449ca2": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/orphanet-change/mydisease.info/smartapi.yaml", - "b772ebfbfa536bba37764d7fddb11d6f": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/orphanet-change/ncats_rare_source/smartapi.yaml", - "326eb1e437303bee27d3cef29227125d": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/orphanet-change/complexportal/smartapi.yaml", - "0212611d1c670f9107baf00b77f0889a": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/ctd-batch-query/CTD/smartapi.yaml", - "8f08d1446e0bb9c2b323713ce83e2bd3": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/mychem-fda-orphan-edit/mychem.info/openapi_full.yml", - "d22b657426375a5295e7da8a303b9893": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/v3-biolink-monarch/biolink/openapi.yml" + "32f36164fabed5d3abe6c2fd899c9418": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/idisk/smartapi.yaml", + "b48c34df08d16311e3bca06b135b828d": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/suppkg/suppkg.yaml", + "e481efd21f8e8c1deac05662439c2294": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/ttd/smartapi.yaml", + "1d288b3a3caf75d541ffaae3aab386c8": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/semmeddb/smartapi.yaml", + "8f08d1446e0bb9c2b323713ce83e2bd3": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/mychem.info/openapi_full.yml", + "1138c3297e8e403b6ac10cff5609b319": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/repodb/smartapi.yaml" } } From 3bba1fee88bb089118dbc9f687dd4d9dfb802d08 Mon Sep 17 00:00:00 2001 From: Colleen Xu Date: Thu, 7 Mar 2024 14:51:14 -0800 Subject: [PATCH 3/3] feat: add text-mining targeted override for treats refactor --- src/config/smartapi_overrides.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/config/smartapi_overrides.json b/src/config/smartapi_overrides.json index 347f40c..ba6f315 100644 --- a/src/config/smartapi_overrides.json +++ b/src/config/smartapi_overrides.json @@ -8,6 +8,7 @@ "e481efd21f8e8c1deac05662439c2294": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/ttd/smartapi.yaml", "1d288b3a3caf75d541ffaae3aab386c8": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/semmeddb/smartapi.yaml", "8f08d1446e0bb9c2b323713ce83e2bd3": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/mychem.info/openapi_full.yml", - "1138c3297e8e403b6ac10cff5609b319": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/repodb/smartapi.yaml" + "1138c3297e8e403b6ac10cff5609b319": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/biolink-4-update/repodb/smartapi.yaml", + "978fe380a147a8641caf72320862697b": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/treats-refactor-tmkp/text_mining/smartapi.yaml" } }