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Create dataset loader for LocText #119

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leonweber opened this issue Feb 17, 2022 · 7 comments · May be fixed by #515
Open

Create dataset loader for LocText #119

leonweber opened this issue Feb 17, 2022 · 7 comments · May be fixed by #515
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@napsternxg

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@leonweber
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Task: NER/RE

License: ???

Format: brat

Language: English

@Article{Cejuela2018,
author = {Juan Miguel Cejuela and Shrikant Vinchurkar and Tatyana Goldberg and Madhukar Sollepura Prabhu Shankar and Ashish Baghudana and Aleksandar Bojchevski and Carsten Uhlig and Andr{'{e}} Ofner and Pandu Raharja{-}Liu and Lars Juhl Jensen and Burkhard Rost},
journal = {{BMC} Bioinform.},
title = {LocText: relation extraction of protein localizations to assist database curation},
year = {2018},
number = {1},
pages = {15:1--15:11},
volume = {19},
bibsource = {dblp computer science bibliography, https://dblp.org},
biburl = {https://dblp.org/rec/journals/bmcbi/CejuelaVGSBBUOR18.bib},
doi = {10.1186/s12859-018-2021-9},
}

source: http://pubannotation.org/downloads/LocText-annotations.tgz
@napsternxg
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#self-assign

@hakunanatasha
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Hi @napsternxg, can you let us know if you are still working on this so we can update our project board? Please just notify us the status by Friday April 8, no worries if you are not finished but intend to work on this. Please either ping me here at @hakunanatasha or ping the discord admins (with @admins)

@napsternxg
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Hi @hakunanatasha yes I plan to work on this over the weekend.

napsternxg added a commit to napsternxg/biomedical that referenced this issue Apr 11, 2022
@napsternxg
Fixes bigscience-workshop#119 - Add loctext
f76705b
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Project url: https://pubannotation.org/projects/LocText
License: Creative Commons Attribution 3.0 Unported License

@jason-fries
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Hi @napsternxg
Just a ping on the status of this dataset. Please let us know if you are still working on it and when you plan to submit a PR. Thanks!!

@napsternxg
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Hi @jason-fries thanks for the reminder. I plan to submit it early next week.

@napsternxg napsternxg linked a pull request Apr 24, 2022 that will close this issue
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@napsternxg
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@jason-fries please find the PR: #515

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Biomedical Dataset Hackathon 2022
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Closes #119 - Add loctext napsternxg/biomedical
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@napsternxg @jason-fries @leonweber @hakunanatasha