From ee9836790139eec41b98a42deb3a1a46ffc856bd Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 13:18:53 -0400 Subject: [PATCH 1/9] add script to detect deprecated bids URI in intended for --- .gitignore | 4 +- .../brainvisa/dataset_description.json | 5 ++ .../brainvisa/dataset_description.json | 5 ++ tools/check_intended_for.py | 71 +++++++++++++++++++ tools/requirements.txt | 3 +- 5 files changed, 86 insertions(+), 2 deletions(-) create mode 100644 tools/check_intended_for.py diff --git a/.gitignore b/.gitignore index 0681b8ab2..2d0a1de7a 100644 --- a/.gitignore +++ b/.gitignore @@ -12,4 +12,6 @@ env/ *.asv -site/ \ No newline at end of file +site/ + +deprecated_intended_for.log \ No newline at end of file diff --git a/ieeg_epilepsy/derivatives/brainvisa/dataset_description.json b/ieeg_epilepsy/derivatives/brainvisa/dataset_description.json index e69de29bb..a8606dca7 100644 --- a/ieeg_epilepsy/derivatives/brainvisa/dataset_description.json +++ b/ieeg_epilepsy/derivatives/brainvisa/dataset_description.json @@ -0,0 +1,5 @@ +{ + "Name": "Brainvisa dertivatives", + "DatasetType": "derivative", + "BIDSVersion": "1.7.0" +} \ No newline at end of file diff --git a/ieeg_epilepsyNWB/derivatives/brainvisa/dataset_description.json b/ieeg_epilepsyNWB/derivatives/brainvisa/dataset_description.json index e69de29bb..a8606dca7 100644 --- a/ieeg_epilepsyNWB/derivatives/brainvisa/dataset_description.json +++ b/ieeg_epilepsyNWB/derivatives/brainvisa/dataset_description.json @@ -0,0 +1,5 @@ +{ + "Name": "Brainvisa dertivatives", + "DatasetType": "derivative", + "BIDSVersion": "1.7.0" +} \ No newline at end of file diff --git a/tools/check_intended_for.py b/tools/check_intended_for.py new file mode 100644 index 000000000..9e4ed279f --- /dev/null +++ b/tools/check_intended_for.py @@ -0,0 +1,71 @@ +"""Check jsons of all datasets for IntendedFor field. + +Make sure that the format is not one of the deprecated ones. + +https://bids-specification.readthedocs.io/en/latest/common-principles.html#bids-uri + +Example: + +- bad + + .. code-block:: json + + "IntendedFor": ["anat/sub-01_T1w.nii.gz"] + + +- good + + .. code-block:: json + + "IntendedFor": ["bids::sub-01/anat/sub-01_T1w.nii.gz"] +""" + +from pathlib import Path +import json +from warnings import warn +from rich import print + +VERBOSE = False + +root_dir = Path(__file__).parent.parent + +deprecated_formats = {} + +for json_path in root_dir.glob("**/*.json"): + + if VERBOSE: + print(f"Checking {json_path.relative_to(root_dir)}") + + with open(json_path) as f: + content = json.load(f) + + if "IntendedFor" in content: + intended_for = content["IntendedFor"] + if isinstance(intended_for, str): + intended_for = [intended_for] + + for intended_for_path in intended_for: + if not intended_for_path.startswith("bids"): + if json_path not in deprecated_formats: + deprecated_formats[json_path] = [] + deprecated_formats[json_path].append(intended_for_path) + +if deprecated_formats: + + log_file = root_dir / "deprecated_intended_for.log" + + with open(log_file, "w") as f: + for json_path, deprecated_paths in deprecated_formats.items(): + f.write(f"{json_path.relative_to(root_dir)}\n") + print(f"{json_path.relative_to(root_dir)}") + for deprecated_path in deprecated_paths: + f.write(f" {deprecated_path}\n") + print(f" {deprecated_path}") + + raise(ValueError)( + f"Found {len(deprecated_formats)} jsons with deprecated IntendedFor formats.\n" + f"See {log_file}\n" + "Please update them to the new format.\n" + "See https://bids-specification.readthedocs.io/en/latest/common-principles.html#bids-uri" + ) + diff --git a/tools/requirements.txt b/tools/requirements.txt index f5ffa6e5a..5ae7690c9 100644 --- a/tools/requirements.txt +++ b/tools/requirements.txt @@ -1,3 +1,4 @@ pybids pandas -tabulate \ No newline at end of file +tabulate +rich \ No newline at end of file From d4a925c7f8529be372af8b819b1509c3436f5b6d Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 13:22:26 -0400 Subject: [PATCH 2/9] add GHA workflow --- .github/workflows/check_intended_for.yml | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 .github/workflows/check_intended_for.yml diff --git a/.github/workflows/check_intended_for.yml b/.github/workflows/check_intended_for.yml new file mode 100644 index 000000000..a8809dc5d --- /dev/null +++ b/.github/workflows/check_intended_for.yml @@ -0,0 +1,24 @@ +name: check intended for + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +on: [push, pull_request] + +jobs: + cehck_intended_for: + runs-on: ubuntu-latest + steps: + - name: Checkout 🛎️ + uses: actions/checkout@v3 + - uses: actions/setup-python@v4 + with: + python-version: "3.11" + - name: Install dependencies 🔧 + run: | + python -m pip install --upgrade pip + python -m pip install -r tools/requirements.txt + + - name: Run script 🚀 + run: python tools/check_intended_for.py \ No newline at end of file From 91e4a3ccb65ff173044f6b4dff565ceac65e6f38 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 13:59:34 -0400 Subject: [PATCH 3/9] start writing script for updating bids uri --- tools/check_intended_for.py | 77 +++++++++++++++++-------------- tools/print_dataset_listing.py | 12 +++-- tools/requirements.txt | 3 +- tools/update_intended_for.py | 84 ++++++++++++++++++++++++++++++++++ 4 files changed, 135 insertions(+), 41 deletions(-) create mode 100644 tools/update_intended_for.py diff --git a/tools/check_intended_for.py b/tools/check_intended_for.py index 9e4ed279f..0188b4a12 100644 --- a/tools/check_intended_for.py +++ b/tools/check_intended_for.py @@ -20,52 +20,59 @@ "IntendedFor": ["bids::sub-01/anat/sub-01_T1w.nii.gz"] """ -from pathlib import Path import json -from warnings import warn -from rich import print +from pathlib import Path VERBOSE = False -root_dir = Path(__file__).parent.parent -deprecated_formats = {} +def root_dir(): + return Path(__file__).parent.parent + -for json_path in root_dir.glob("**/*.json"): +def main(): + deprecated_formats = {} - if VERBOSE: - print(f"Checking {json_path.relative_to(root_dir)}") + for json_path in root_dir().glob("**/*.json"): + if VERBOSE: + print(f"Checking {json_path.relative_to(root_dir())}") - with open(json_path) as f: - content = json.load(f) + with open(json_path) as f: + content = json.load(f) + + if "IntendedFor" not in content: + continue - if "IntendedFor" in content: intended_for = content["IntendedFor"] if isinstance(intended_for, str): intended_for = [intended_for] for intended_for_path in intended_for: - if not intended_for_path.startswith("bids"): - if json_path not in deprecated_formats: - deprecated_formats[json_path] = [] - deprecated_formats[json_path].append(intended_for_path) - -if deprecated_formats: - - log_file = root_dir / "deprecated_intended_for.log" - - with open(log_file, "w") as f: - for json_path, deprecated_paths in deprecated_formats.items(): - f.write(f"{json_path.relative_to(root_dir)}\n") - print(f"{json_path.relative_to(root_dir)}") - for deprecated_path in deprecated_paths: - f.write(f" {deprecated_path}\n") - print(f" {deprecated_path}") - - raise(ValueError)( - f"Found {len(deprecated_formats)} jsons with deprecated IntendedFor formats.\n" - f"See {log_file}\n" - "Please update them to the new format.\n" - "See https://bids-specification.readthedocs.io/en/latest/common-principles.html#bids-uri" - ) - + if intended_for_path.startswith("bids:"): + continue + + if json_path not in deprecated_formats: + deprecated_formats[json_path] = [] + deprecated_formats[json_path].append(intended_for_path) + + if deprecated_formats: + log_file = root_dir() / "deprecated_intended_for.log" + + with open(log_file, "w") as f: + for json_path, deprecated_paths in deprecated_formats.items(): + f.write(f"{json_path.relative_to(root_dir())}\n") + print(f"{json_path.relative_to(root_dir())}") + for deprecated_path in deprecated_paths: + f.write(f" {deprecated_path}\n") + print(f" {deprecated_path}") + + raise (ValueError)( + f"Found {len(deprecated_formats)} jsons with deprecated IntendedFor formats.\n" + f"See {log_file}\n" + "Please update them to the new format.\n" + "See https://bids-specification.readthedocs.io/en/latest/common-principles.html#bids-uri" + ) + + +if __name__ == "__main__": + main() diff --git a/tools/print_dataset_listing.py b/tools/print_dataset_listing.py index 016f32f1a..99e350498 100644 --- a/tools/print_dataset_listing.py +++ b/tools/print_dataset_listing.py @@ -1,6 +1,7 @@ """Take the listing of examples datasets and turns it into a markdown document with a series of markdown tables.""" from pathlib import Path + import pandas as pd from bids import BIDSLayout @@ -93,7 +94,7 @@ def update_datatypes_and_suffixes(df, root): def add_links(df): print("Adding hyperlinks in table...") for row in df.iterrows(): - for col in ["name","link to full data", "maintained by"]: + for col in ["name", "link to full data", "maintained by"]: if not isinstance(row[1][col], str): continue if col == "name": @@ -105,7 +106,6 @@ def add_links(df): return df - def clean_previous_run(output_file: Path) -> None: print("Cleaning output files from previous run...") lines = output_file.read_text().split("\n") @@ -117,13 +117,17 @@ def clean_previous_run(output_file: Path) -> None: break f.write(line + "\n") + def add_warning(f): - f.write(""" -""".upper()) +""".upper() + ) + def add_tables(df: pd.DataFrame, output_file: Path) -> None: print("Writing markdown tables...") diff --git a/tools/requirements.txt b/tools/requirements.txt index 5ae7690c9..f5ffa6e5a 100644 --- a/tools/requirements.txt +++ b/tools/requirements.txt @@ -1,4 +1,3 @@ pybids pandas -tabulate -rich \ No newline at end of file +tabulate \ No newline at end of file diff --git a/tools/update_intended_for.py b/tools/update_intended_for.py new file mode 100644 index 000000000..59f26e576 --- /dev/null +++ b/tools/update_intended_for.py @@ -0,0 +1,84 @@ +"""Update jsons of all datasets for IntendedFor field to use proper format. + +https://bids-specification.readthedocs.io/en/latest/common-principles.html#bids-uri + +Example: + +- bad + + .. code-block:: json + + "IntendedFor": ["anat/sub-01_T1w.nii.gz"] + + +- good + + .. code-block:: json + + "IntendedFor": ["bids::sub-01/anat/sub-01_T1w.nii.gz"] +""" + +import json +from pathlib import Path + +from rich import print + +VERBOSE = False + + +def root_dir(): + return Path(__file__).parent.parent + + +def main(): + for json_path in root_dir().glob("**/*.json"): + + if VERBOSE: + print(f"Checking {json_path.relative_to(root_dir())}") + + with open(json_path) as f: + content = json.load(f) + + if "IntendedFor" not in content: + continue + + intended_for = content["IntendedFor"] + + was_str = False + if isinstance(intended_for, str): + was_str = True + intended_for = [intended_for] + + for i, intended_for_path in enumerate(intended_for): + if intended_for_path.startswith("bids:"): + continue + + if not intended_for_path.startswith( + ("ses-", "anat", "func", "ieeg", "fmap", "perf", "micr") + ): + if VERBOSE: + print(f"[red]will not update {intended_for_path}[/red]") + continue + + filename = Path(intended_for_path).name + subject = filename.split("_")[0] + + if intended_for_path.startswith("ses-"): + session = intended_for_path.split("/")[0] + datatype = intended_for_path.split("/")[1] + uri = [subject, session, datatype, filename] + else: + datatype = intended_for_path.split("/")[0] + uri = [subject, datatype, filename] + + intended_for[i] = f"bids::{'/'.join(uri)}" + + if was_str: + intended_for = intended_for[0] + + if VERBOSE: + print(intended_for) + + +if __name__ == "__main__": + main() From e89fcb645cda84d74c7f7b44f9525bfea4a5d4d6 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 14:54:39 -0400 Subject: [PATCH 4/9] update tools --- tools/update_intended_for.py | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/tools/update_intended_for.py b/tools/update_intended_for.py index 59f26e576..d877774be 100644 --- a/tools/update_intended_for.py +++ b/tools/update_intended_for.py @@ -23,7 +23,8 @@ from rich import print -VERBOSE = False +VERBOSE = True +DRY_RUN = False def root_dir(): @@ -32,7 +33,6 @@ def root_dir(): def main(): for json_path in root_dir().glob("**/*.json"): - if VERBOSE: print(f"Checking {json_path.relative_to(root_dir())}") @@ -79,6 +79,11 @@ def main(): if VERBOSE: print(intended_for) + if not DRY_RUN: + with open(json_path, "w") as f: + content["IntendedFor"] = intended_for + json.dump(content, f, indent=4) + if __name__ == "__main__": main() From f6a71be4e5a8ac2c6b79728004852b5bd505d29c Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 15:09:28 -0400 Subject: [PATCH 5/9] update tools --- tools/update_intended_for.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/tools/update_intended_for.py b/tools/update_intended_for.py index d877774be..c69354a7d 100644 --- a/tools/update_intended_for.py +++ b/tools/update_intended_for.py @@ -23,8 +23,8 @@ from rich import print -VERBOSE = True -DRY_RUN = False +VERBOSE = False +DRY_RUN = True def root_dir(): @@ -33,14 +33,15 @@ def root_dir(): def main(): for json_path in root_dir().glob("**/*.json"): - if VERBOSE: - print(f"Checking {json_path.relative_to(root_dir())}") with open(json_path) as f: content = json.load(f) if "IntendedFor" not in content: continue + + print() + print(f"Checking {json_path.relative_to(root_dir())}") intended_for = content["IntendedFor"] @@ -56,8 +57,7 @@ def main(): if not intended_for_path.startswith( ("ses-", "anat", "func", "ieeg", "fmap", "perf", "micr") ): - if VERBOSE: - print(f"[red]will not update {intended_for_path}[/red]") + print(f"[red]will not update {intended_for_path}[/red]") continue filename = Path(intended_for_path).name From f39810c74335eaf9682ef1854dc3e4eafe56daf2 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 15:10:15 -0400 Subject: [PATCH 6/9] update tools --- tools/update_intended_for.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools/update_intended_for.py b/tools/update_intended_for.py index c69354a7d..9d3130b8f 100644 --- a/tools/update_intended_for.py +++ b/tools/update_intended_for.py @@ -82,7 +82,7 @@ def main(): if not DRY_RUN: with open(json_path, "w") as f: content["IntendedFor"] = intended_for - json.dump(content, f, indent=4) + json.dump(content, f, indent=1) if __name__ == "__main__": From 081f662be11755ba11056b55209d8b51ad7901a7 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 15:10:32 -0400 Subject: [PATCH 7/9] update tools --- tools/update_intended_for.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/tools/update_intended_for.py b/tools/update_intended_for.py index 9d3130b8f..7b33039d0 100644 --- a/tools/update_intended_for.py +++ b/tools/update_intended_for.py @@ -24,7 +24,7 @@ from rich import print VERBOSE = False -DRY_RUN = True +DRY_RUN = False def root_dir(): @@ -33,13 +33,12 @@ def root_dir(): def main(): for json_path in root_dir().glob("**/*.json"): - with open(json_path) as f: content = json.load(f) if "IntendedFor" not in content: continue - + print() print(f"Checking {json_path.relative_to(root_dir())}") From 1de9f6c61b73bdd984b6ceb7647d620d7fc7cf17 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 15:14:32 -0400 Subject: [PATCH 8/9] update tools --- tools/update_intended_for.py | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/tools/update_intended_for.py b/tools/update_intended_for.py index 7b33039d0..f8ddf8798 100644 --- a/tools/update_intended_for.py +++ b/tools/update_intended_for.py @@ -49,6 +49,7 @@ def main(): was_str = True intended_for = [intended_for] + update = False for i, intended_for_path in enumerate(intended_for): if intended_for_path.startswith("bids:"): continue @@ -59,6 +60,8 @@ def main(): print(f"[red]will not update {intended_for_path}[/red]") continue + update = True + filename = Path(intended_for_path).name subject = filename.split("_")[0] @@ -75,10 +78,9 @@ def main(): if was_str: intended_for = intended_for[0] - if VERBOSE: - print(intended_for) - - if not DRY_RUN: + if update and not DRY_RUN: + if VERBOSE: + print(intended_for) with open(json_path, "w") as f: content["IntendedFor"] = intended_for json.dump(content, f, indent=1) From c7673e5947183779069ed2d04f7a414a9ed02a99 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 2 Sep 2023 15:15:08 -0400 Subject: [PATCH 9/9] [DATALAD RUNCMD] fix bids uri === Do not change lines below === { "chain": [], "cmd": "python tools/update_intended_for.py", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ --- asl002/sub-Sub103/perf/sub-Sub103_m0scan.json | 61 ++-- asl003/sub-Sub1/perf/sub-Sub1_m0scan.json | 52 ++-- .../sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json | 51 +++- asl004/sub-Sub1/perf/sub-Sub1_m0scan.json | 51 +++- asl005/sub-Sub103/perf/sub-Sub103_m0scan.json | 40 +-- .../fmap/sub-01_ses-mri_phasediff.json | 34 +-- .../fmap/sub-02_ses-mri_phasediff.json | 34 +-- .../fmap/sub-03_ses-mri_phasediff.json | 34 +-- .../fmap/sub-04_ses-mri_phasediff.json | 34 +-- .../fmap/sub-05_ses-mri_phasediff.json | 34 +-- .../fmap/sub-06_ses-mri_phasediff.json | 34 +-- .../fmap/sub-07_ses-mri_phasediff.json | 34 +-- .../fmap/sub-08_ses-mri_phasediff.json | 34 +-- .../fmap/sub-09_ses-mri_phasediff.json | 34 +-- .../fmap/sub-10_ses-mri_phasediff.json | 34 +-- .../fmap/sub-11_ses-mri_phasediff.json | 34 +-- .../fmap/sub-12_ses-mri_phasediff.json | 34 +-- .../fmap/sub-13_ses-mri_phasediff.json | 34 +-- .../fmap/sub-14_ses-mri_phasediff.json | 34 +-- .../fmap/sub-15_ses-mri_phasediff.json | 34 +-- .../fmap/sub-16_ses-mri_phasediff.json | 34 +-- .../sub-01/eeg/sub-01_coordsystem.json | 38 ++- .../sub-02/eeg/sub-02_coordsystem.json | 38 ++- .../sub-03/eeg/sub-03_coordsystem.json | 38 ++- .../sub-04/eeg/sub-04_coordsystem.json | 38 ++- .../sub-05/eeg/sub-05_coordsystem.json | 38 ++- .../sub-06/eeg/sub-06_coordsystem.json | 38 ++- .../sub-07/eeg/sub-07_coordsystem.json | 38 ++- .../sub-08/eeg/sub-08_coordsystem.json | 38 ++- .../sub-09/eeg/sub-09_coordsystem.json | 38 ++- .../sub-10/eeg/sub-10_coordsystem.json | 38 ++- .../sub-11/eeg/sub-11_coordsystem.json | 38 ++- .../sub-12/eeg/sub-12_coordsystem.json | 38 ++- .../sub-13/eeg/sub-13_coordsystem.json | 38 ++- .../sub-14/eeg/sub-14_coordsystem.json | 38 ++- .../sub-15/eeg/sub-15_coordsystem.json | 38 ++- .../sub-16/eeg/sub-16_coordsystem.json | 38 ++- .../fmap/sub-100307_acq-forT1w_phasediff.json | 8 +- .../sub-som682_ses-nyu3t01_dir-LR_epi.json | 284 +++++++++--------- .../sub-som682_ses-nyu3t01_dir-RL_epi.json | 284 +++++++++--------- .../micr/sub-01_ses-01_sample-A_photo.json | 10 +- .../micr/sub-01_ses-02_sample-A_photo.json | 10 +- .../sub-01/micr/sub-01_sample-A_photo.json | 16 +- .../sub-01/micr/sub-01_sample-B_photo.json | 16 +- qmri_mp2rageme/sub-1/fmap/sub-1_TB1map.json | 26 +- .../hmri/sub-01/fmap/sub-01_TB1map.json | 62 ++-- .../sub-01/fmap/sub-01_acq-MTw_RB1map.json | 26 +- .../sub-01/fmap/sub-01_acq-PDw_RB1map.json | 30 +- .../sub-01/fmap/sub-01_acq-T1w_RB1map.json | 30 +- .../fmap/sub-01_acq-bodyMTw_RB1COR.json | 46 +-- .../fmap/sub-01_acq-bodyPDw_RB1COR.json | 50 +-- .../fmap/sub-01_acq-bodyT1w_RB1COR.json | 50 +-- .../fmap/sub-01_acq-headMTw_RB1COR.json | 46 +-- .../fmap/sub-01_acq-headPDw_RB1COR.json | 50 +-- .../fmap/sub-01_acq-headT1w_RB1COR.json | 50 +-- .../fmap/sub-01_echo-1_flip-01_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-02_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-03_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-04_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-05_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-06_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-07_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-08_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-09_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-10_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-1_flip-11_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-01_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-02_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-03_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-04_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-05_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-06_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-07_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-08_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-09_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-10_TB1EPI.json | 84 +++--- .../fmap/sub-01_echo-2_flip-11_TB1EPI.json | 84 +++--- qmri_mpm/sub-01/fmap/sub-01_magnitude1.json | 46 +-- qmri_mpm/sub-01/fmap/sub-01_magnitude2.json | 46 +-- qmri_mpm/sub-01/fmap/sub-01_phasediff.json | 48 +-- .../qMRLab/sub-01/fmap/sub-01_TB1map.json | 44 +-- .../sub-01/fmap/sub-01_flip-1_TB1DAM.json | 14 +- .../sub-01/fmap/sub-01_flip-2_TB1DAM.json | 14 +- .../qMRLab/sub-01/fmap/sub-01_TB1map.json | 53 ++-- 84 files changed, 2455 insertions(+), 2159 deletions(-) diff --git a/asl002/sub-Sub103/perf/sub-Sub103_m0scan.json b/asl002/sub-Sub103/perf/sub-Sub103_m0scan.json index 08c1801d1..55e50f455 100644 --- a/asl002/sub-Sub103/perf/sub-Sub103_m0scan.json +++ b/asl002/sub-Sub103/perf/sub-Sub103_m0scan.json @@ -1,19 +1,42 @@ -{"Manufacturer":"Philips", -"ManufacturersModelName":"Achieva", -"SoftwareVersions":"5.1.7_5.1.7.2", -"MagneticFieldStrength":3, -"ReceiveCoilName":"MULTI_COIL", -"MRAcquisitionType":"2D", -"PulseSequenceType":"EPI", -"ScanningSequence":"GR", -"SequenceVariant":"SK", -"ScanOptions":"FS", -"PulseSequenceDetails":"Philips 2D epi pcasl product", -"PartialFourier":0.421875, -"PhaseEncodingDirection":"j", -"TotalReadoutTime":0.02198740305218437, -"EchoTime":0.015001, -"SliceTiming":[0,0.0385,0.077,0.1155,0.154,0.1925,0.231,0.2695,0.308,0.3465,0.385,0.4235,0.462,0.5004999999999999,0.539,0.5775,0.616,0.6545,0.6929999999999999,0.7315], -"FlipAngle":90, -"RepetitionTimePreparation":9, -"IntendedFor":"perf/sub-Sub103_asl.nii.gz"} \ No newline at end of file +{ + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "SoftwareVersions": "5.1.7_5.1.7.2", + "MagneticFieldStrength": 3, + "ReceiveCoilName": "MULTI_COIL", + "MRAcquisitionType": "2D", + "PulseSequenceType": "EPI", + "ScanningSequence": "GR", + "SequenceVariant": "SK", + "ScanOptions": "FS", + "PulseSequenceDetails": "Philips 2D epi pcasl product", + "PartialFourier": 0.421875, + "PhaseEncodingDirection": "j", + "TotalReadoutTime": 0.02198740305218437, + "EchoTime": 0.015001, + "SliceTiming": [ + 0, + 0.0385, + 0.077, + 0.1155, + 0.154, + 0.1925, + 0.231, + 0.2695, + 0.308, + 0.3465, + 0.385, + 0.4235, + 0.462, + 0.5005, + 0.539, + 0.5775, + 0.616, + 0.6545, + 0.693, + 0.7315 + ], + "FlipAngle": 90, + "RepetitionTimePreparation": 9, + "IntendedFor": "bids::sub-Sub103/perf/sub-Sub103_asl.nii.gz" +} \ No newline at end of file diff --git a/asl003/sub-Sub1/perf/sub-Sub1_m0scan.json b/asl003/sub-Sub1/perf/sub-Sub1_m0scan.json index 0e2384cb7..1b54141e5 100644 --- a/asl003/sub-Sub1/perf/sub-Sub1_m0scan.json +++ b/asl003/sub-Sub1/perf/sub-Sub1_m0scan.json @@ -1,23 +1,29 @@ -{"Manufacturer":"Siemens", -"ManufacturersModelName":"TrioTim", -"SoftwareVersions":"N4_VB17A_LATEST_20090307", -"MagneticFieldStrength":3, -"ReceiveCoilName":"32Ch_Head", -"ReceiveCoilActiveElements":"C:HEA;HEP", -"MRAcquisitionType":"3D", -"PulseSequenceType":"3Dgrase", -"ScanningSequence":"RM", -"SequenceVariant":"SK", -"ScanOptions":"SAT1_FS", -"SequenceName":"grs3d3d1_1152t0", -"PulseSequenceDetails":"Bremen sequence: fme_ASL_Collection_002A", -"PartialFourier":1, -"PhaseEncodingDirection":"j-", -"EffectiveEchoSpacing":0.00052, -"TotalReadoutTime":0.0104, -"EchoTime":0.01614, -"DwellTime":3.4e-06, -"FlipAngle":180, -"RepetitionTimePreparation":6, -"IntendedFor":"perf/sub-Sub1_asl.nii.gz", -"AcquisitionVoxelsize":[2,2,5]} \ No newline at end of file +{ + "Manufacturer": "Siemens", + "ManufacturersModelName": "TrioTim", + "SoftwareVersions": "N4_VB17A_LATEST_20090307", + "MagneticFieldStrength": 3, + "ReceiveCoilName": "32Ch_Head", + "ReceiveCoilActiveElements": "C:HEA;HEP", + "MRAcquisitionType": "3D", + "PulseSequenceType": "3Dgrase", + "ScanningSequence": "RM", + "SequenceVariant": "SK", + "ScanOptions": "SAT1_FS", + "SequenceName": "grs3d3d1_1152t0", + "PulseSequenceDetails": "Bremen sequence: fme_ASL_Collection_002A", + "PartialFourier": 1, + "PhaseEncodingDirection": "j-", + "EffectiveEchoSpacing": 0.00052, + "TotalReadoutTime": 0.0104, + "EchoTime": 0.01614, + "DwellTime": 3.4e-06, + "FlipAngle": 180, + "RepetitionTimePreparation": 6, + "IntendedFor": "bids::sub-Sub1/perf/sub-Sub1_asl.nii.gz", + "AcquisitionVoxelsize": [ + 2, + 2, + 5 + ] +} \ No newline at end of file diff --git a/asl004/sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json b/asl004/sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json index 59a582ffd..31b28a61d 100644 --- a/asl004/sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json +++ b/asl004/sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json @@ -1,12 +1,39 @@ -{"Manufacturer":"Siemens", -"ManufacturersModelName":"TrioTim", -"MagneticFieldStrength":3, -"MRAcquisitionType":"2D", -"PulseSequenceType":"EPI", -"PhaseEncodingDirection":"j", -"TotalReadoutTime":0.06, -"EchoTime":0.014, -"SliceTiming":[0,0.0452,0.0904,0.1356,0.1808,0.226,0.2712,0.3164,0.3616,0.4068,0.452,0.4972,0.5424,0.5876,0.6328,0.678,0.7232,0.7684,0.8136,0.8588,0.904,0.9492,0.9944,1.0396], -"FlipAngle":90, -"RepetitionTimePreparation":4.8, -"IntendedFor":"perf/sub-Sub1_m0scan.nii.gz"} \ No newline at end of file +{ + "Manufacturer": "Siemens", + "ManufacturersModelName": "TrioTim", + "MagneticFieldStrength": 3, + "MRAcquisitionType": "2D", + "PulseSequenceType": "EPI", + "PhaseEncodingDirection": "j", + "TotalReadoutTime": 0.06, + "EchoTime": 0.014, + "SliceTiming": [ + 0, + 0.0452, + 0.0904, + 0.1356, + 0.1808, + 0.226, + 0.2712, + 0.3164, + 0.3616, + 0.4068, + 0.452, + 0.4972, + 0.5424, + 0.5876, + 0.6328, + 0.678, + 0.7232, + 0.7684, + 0.8136, + 0.8588, + 0.904, + 0.9492, + 0.9944, + 1.0396 + ], + "FlipAngle": 90, + "RepetitionTimePreparation": 4.8, + "IntendedFor": "bids::sub-Sub1/perf/sub-Sub1_m0scan.nii.gz" +} \ No newline at end of file diff --git a/asl004/sub-Sub1/perf/sub-Sub1_m0scan.json b/asl004/sub-Sub1/perf/sub-Sub1_m0scan.json index 36612c562..8007e5005 100644 --- a/asl004/sub-Sub1/perf/sub-Sub1_m0scan.json +++ b/asl004/sub-Sub1/perf/sub-Sub1_m0scan.json @@ -1,12 +1,39 @@ -{"Manufacturer":"Siemens", -"ManufacturersModelName":"TrioTim", -"MagneticFieldStrength":3, -"MRAcquisitionType":"2D", -"PulseSequenceType":"EPI", -"PhaseEncodingDirection":"j-", -"TotalReadoutTime":0.06, -"EchoTime":0.014, -"SliceTiming":[0,0.0452,0.0904,0.1356,0.1808,0.226,0.2712,0.3164,0.3616,0.4068,0.452,0.4972,0.5424,0.5876,0.6328,0.678,0.7232,0.7684,0.8136,0.8588,0.904,0.9492,0.9944,1.0396], -"FlipAngle":90, -"RepetitionTimePreparation":4.8, -"IntendedFor":"perf/sub-Sub1_asl.nii.gz"} \ No newline at end of file +{ + "Manufacturer": "Siemens", + "ManufacturersModelName": "TrioTim", + "MagneticFieldStrength": 3, + "MRAcquisitionType": "2D", + "PulseSequenceType": "EPI", + "PhaseEncodingDirection": "j-", + "TotalReadoutTime": 0.06, + "EchoTime": 0.014, + "SliceTiming": [ + 0, + 0.0452, + 0.0904, + 0.1356, + 0.1808, + 0.226, + 0.2712, + 0.3164, + 0.3616, + 0.4068, + 0.452, + 0.4972, + 0.5424, + 0.5876, + 0.6328, + 0.678, + 0.7232, + 0.7684, + 0.8136, + 0.8588, + 0.904, + 0.9492, + 0.9944, + 1.0396 + ], + "FlipAngle": 90, + "RepetitionTimePreparation": 4.8, + "IntendedFor": "bids::sub-Sub1/perf/sub-Sub1_asl.nii.gz" +} \ No newline at end of file diff --git a/asl005/sub-Sub103/perf/sub-Sub103_m0scan.json b/asl005/sub-Sub103/perf/sub-Sub103_m0scan.json index d0ab6d61a..c38f2a0db 100644 --- a/asl005/sub-Sub103/perf/sub-Sub103_m0scan.json +++ b/asl005/sub-Sub103/perf/sub-Sub103_m0scan.json @@ -1,19 +1,21 @@ -{"Manufacturer":"Siemens", -"ManufacturersModelName":"Prisma_fit", -"SoftwareVersions":"syngo_MR_E11", -"MagneticFieldStrength":3, -"ReceiveCoilName":"HeadNeck_64", -"ReceiveCoilActiveElements":"HC1-6", -"MRAcquisitionType":"3D", -"PulseSequenceType":"3Dgrase", -"ScanningSequence":"EP", -"SequenceVariant":"SK", -"ScanOptions":"SAT1_FS", -"SequenceName":"tg818I3d1_6720", -"PulseSequenceDetails":"Siemens 3D GRASE product sequence (WIP): tgse_csl_818", -"PartialFourier":1, -"EchoTime":0.01328, -"DwellTime":3.2e-06, -"FlipAngle":130, -"RepetitionTimePreparation":4.95, -"IntendedFor":"perf/sub-Sub103_asl.nii.gz"} \ No newline at end of file +{ + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "SoftwareVersions": "syngo_MR_E11", + "MagneticFieldStrength": 3, + "ReceiveCoilName": "HeadNeck_64", + "ReceiveCoilActiveElements": "HC1-6", + "MRAcquisitionType": "3D", + "PulseSequenceType": "3Dgrase", + "ScanningSequence": "EP", + "SequenceVariant": "SK", + "ScanOptions": "SAT1_FS", + "SequenceName": "tg818I3d1_6720", + "PulseSequenceDetails": "Siemens 3D GRASE product sequence (WIP): tgse_csl_818", + "PartialFourier": 1, + "EchoTime": 0.01328, + "DwellTime": 3.2e-06, + "FlipAngle": 130, + "RepetitionTimePreparation": 4.95, + "IntendedFor": "bids::sub-Sub103/perf/sub-Sub103_asl.nii.gz" +} \ No newline at end of file diff --git a/ds000117/sub-01/ses-mri/fmap/sub-01_ses-mri_phasediff.json b/ds000117/sub-01/ses-mri/fmap/sub-01_ses-mri_phasediff.json index 18b9322af..d1b29a214 100644 --- a/ds000117/sub-01/ses-mri/fmap/sub-01_ses-mri_phasediff.json +++ b/ds000117/sub-01/ses-mri/fmap/sub-01_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz", - "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz" - ] -} +{ + "RepetitionTime": 0.4, + "EchoTime1": 0.00519, + "EchoTime2": 0.00765, + "FlipAngle": 60, + "IntendedFor": [ + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.json b/ds000117/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.json index 0fcd8757e..c5c32c291 100644 --- a/ds000117/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.json +++ b/ds000117/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-07_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-08_bold.nii.gz", - "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-09_bold.nii.gz" - ] -} +{ + "RepetitionTime": 0.4, + "EchoTime1": 0.00519, + "EchoTime2": 0.00765, + "FlipAngle": 60, + "IntendedFor": [ + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-02_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-03_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-04_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-05_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-06_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-07_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-03/ses-mri/fmap/sub-03_ses-mri_phasediff.json b/ds000117/sub-03/ses-mri/fmap/sub-03_ses-mri_phasediff.json index 8b5a8646f..9398f3b63 100644 --- a/ds000117/sub-03/ses-mri/fmap/sub-03_ses-mri_phasediff.json +++ b/ds000117/sub-03/ses-mri/fmap/sub-03_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-07_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-08_bold.nii.gz", - "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-09_bold.nii.gz" - ] -} +{ + "RepetitionTime": 0.4, + "EchoTime1": 0.00519, + "EchoTime2": 0.00765, + "FlipAngle": 60, + "IntendedFor": [ + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-01_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-02_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-03_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-04_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-05_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-06_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-07_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-04/ses-mri/fmap/sub-04_ses-mri_phasediff.json b/ds000117/sub-04/ses-mri/fmap/sub-04_ses-mri_phasediff.json index 73193b803..b0895fb40 100644 --- a/ds000117/sub-04/ses-mri/fmap/sub-04_ses-mri_phasediff.json +++ b/ds000117/sub-04/ses-mri/fmap/sub-04_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-07_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-08_bold.nii.gz", - "ses-mri/func/sub-04_ses-mri_task-facerecognition_run-09_bold.nii.gz" - ] -} +{ + "RepetitionTime": 0.4, + "EchoTime1": 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b/ds000117/sub-05/ses-mri/fmap/sub-05_ses-mri_phasediff.json index 189bb0df3..d05f8bec9 100644 --- a/ds000117/sub-05/ses-mri/fmap/sub-05_ses-mri_phasediff.json +++ b/ds000117/sub-05/ses-mri/fmap/sub-05_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-07_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-08_bold.nii.gz", - "ses-mri/func/sub-05_ses-mri_task-facerecognition_run-09_bold.nii.gz" - ] -} +{ + "RepetitionTime": 0.4, + "EchoTime1": 0.00519, + "EchoTime2": 0.00765, + "FlipAngle": 60, + "IntendedFor": [ + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-01_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-02_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-03_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-04_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-05_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-06_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-07_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-05/ses-mri/func/sub-05_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-06/ses-mri/fmap/sub-06_ses-mri_phasediff.json b/ds000117/sub-06/ses-mri/fmap/sub-06_ses-mri_phasediff.json index 14fd8223c..31b380a0b 100644 --- a/ds000117/sub-06/ses-mri/fmap/sub-06_ses-mri_phasediff.json +++ b/ds000117/sub-06/ses-mri/fmap/sub-06_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-06_ses-mri_task-facerecognition_run-07_bold.nii.gz", - 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"bids::sub-06/ses-mri/func/sub-06_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-07/ses-mri/fmap/sub-07_ses-mri_phasediff.json b/ds000117/sub-07/ses-mri/fmap/sub-07_ses-mri_phasediff.json index 310edc3e7..87b727068 100644 --- a/ds000117/sub-07/ses-mri/fmap/sub-07_ses-mri_phasediff.json +++ b/ds000117/sub-07/ses-mri/fmap/sub-07_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-07_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-07_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-07_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-07_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-07_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-07_ses-mri_task-facerecognition_run-06_bold.nii.gz", - 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"bids::sub-07/ses-mri/func/sub-07_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-07/ses-mri/func/sub-07_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-08/ses-mri/fmap/sub-08_ses-mri_phasediff.json b/ds000117/sub-08/ses-mri/fmap/sub-08_ses-mri_phasediff.json index be92498f8..5c654267a 100644 --- a/ds000117/sub-08/ses-mri/fmap/sub-08_ses-mri_phasediff.json +++ b/ds000117/sub-08/ses-mri/fmap/sub-08_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-08_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-08_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-08_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-08_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-08_ses-mri_task-facerecognition_run-05_bold.nii.gz", - 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"bids::sub-08/ses-mri/func/sub-08_ses-mri_task-facerecognition_run-07_bold.nii.gz", + "bids::sub-08/ses-mri/func/sub-08_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-08/ses-mri/func/sub-08_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-09/ses-mri/fmap/sub-09_ses-mri_phasediff.json b/ds000117/sub-09/ses-mri/fmap/sub-09_ses-mri_phasediff.json index c8bdc32ba..ce6c8197c 100644 --- a/ds000117/sub-09/ses-mri/fmap/sub-09_ses-mri_phasediff.json +++ b/ds000117/sub-09/ses-mri/fmap/sub-09_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-09_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-09_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-09_ses-mri_task-facerecognition_run-03_bold.nii.gz", - 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"bids::sub-09/ses-mri/func/sub-09_ses-mri_task-facerecognition_run-06_bold.nii.gz", + "bids::sub-09/ses-mri/func/sub-09_ses-mri_task-facerecognition_run-07_bold.nii.gz", + "bids::sub-09/ses-mri/func/sub-09_ses-mri_task-facerecognition_run-08_bold.nii.gz", + "bids::sub-09/ses-mri/func/sub-09_ses-mri_task-facerecognition_run-09_bold.nii.gz" + ] +} \ No newline at end of file diff --git a/ds000117/sub-10/ses-mri/fmap/sub-10_ses-mri_phasediff.json b/ds000117/sub-10/ses-mri/fmap/sub-10_ses-mri_phasediff.json index cabd568f0..825961e52 100644 --- a/ds000117/sub-10/ses-mri/fmap/sub-10_ses-mri_phasediff.json +++ b/ds000117/sub-10/ses-mri/fmap/sub-10_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-10_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-10_ses-mri_task-facerecognition_run-02_bold.nii.gz", - 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a/ds000117/sub-15/ses-mri/fmap/sub-15_ses-mri_phasediff.json +++ b/ds000117/sub-15/ses-mri/fmap/sub-15_ses-mri_phasediff.json @@ -1,17 +1,17 @@ -{ - "RepetitionTime": 0.4, - "EchoTime1": 0.00519, - "EchoTime2": 0.00765, - "FlipAngle": 60, - "IntendedFor": [ - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-01_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-02_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-03_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-04_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-05_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-06_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-07_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-08_bold.nii.gz", - "ses-mri/func/sub-15_ses-mri_task-facerecognition_run-09_bold.nii.gz" - ] -} +{ + "RepetitionTime": 0.4, + "EchoTime1": 0.00519, + "EchoTime2": 0.00765, + 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60b29a597..c8c670b88 100644 --- a/eeg_ds000117/sub-01/eeg/sub-01_coordsystem.json +++ b/eeg_ds000117/sub-01/eeg/sub-01_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.072421, -7.0961e-09, 7.7314e-09], - "NAS": [-5.772e-09, 0.10353, 4.7199e-09], - "RPA": [0.077791, -3.0159e-10, 7.8728e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-01_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.072421, + -7.0961e-09, + 7.7314e-09 + ], + "NAS": [ + -5.772e-09, + 0.10353, + 4.7199e-09 + ], + "RPA": [ + 0.077791, + -3.0159e-10, + 7.8728e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": 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"EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.070999, + -2.6537e-08, + -6.4401e-09 + ], + "NAS": [ + 3.9995e-09, + 0.10636, + -9.817e-09 + ], + "RPA": [ + 0.077565, + 1.5987e-08, + -6.6275e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-02/anat/sub-02_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-03/eeg/sub-03_coordsystem.json b/eeg_ds000117/sub-03/eeg/sub-03_coordsystem.json index 89f105730..5de42cdac 100644 --- a/eeg_ds000117/sub-03/eeg/sub-03_coordsystem.json +++ b/eeg_ds000117/sub-03/eeg/sub-03_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.069659, 1.451e-09, -2.5793e-09], - "NAS": 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a/eeg_ds000117/sub-04/eeg/sub-04_coordsystem.json +++ b/eeg_ds000117/sub-04/eeg/sub-04_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.072223, 1.1847e-08, 7.8273e-09], - "NAS": [-1.0052e-09, 0.10336, 8.4566e-09], - "RPA": [0.073092, 1.6933e-08, 8.8433e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-04_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.072223, + 1.1847e-08, + 7.8273e-09 + ], + "NAS": [ + -1.0052e-09, + 0.10336, + 8.4566e-09 + ], + "RPA": [ + 0.073092, + 1.6933e-08, + 8.8433e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-04/anat/sub-04_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-05/eeg/sub-05_coordsystem.json b/eeg_ds000117/sub-05/eeg/sub-05_coordsystem.json index 9357fef52..1a55440b8 100644 --- a/eeg_ds000117/sub-05/eeg/sub-05_coordsystem.json +++ b/eeg_ds000117/sub-05/eeg/sub-05_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.064886, 9.4591e-09, -1.2274e-09], - "NAS": [1.5908e-09, 0.097857, -1.8505e-09], - "RPA": [0.068605, 2.9818e-09, -2.071e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-05_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.064886, + 9.4591e-09, + -1.2274e-09 + ], + "NAS": [ + 1.5908e-09, + 0.097857, + -1.8505e-09 + ], + "RPA": [ + 0.068605, + 2.9818e-09, + -2.071e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-05/anat/sub-05_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-06/eeg/sub-06_coordsystem.json b/eeg_ds000117/sub-06/eeg/sub-06_coordsystem.json index 7fab03b86..825943ab7 100644 --- a/eeg_ds000117/sub-06/eeg/sub-06_coordsystem.json +++ b/eeg_ds000117/sub-06/eeg/sub-06_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.06559, 2.3605e-08, 2.773e-09], - "NAS": [-4.4034e-09, 0.095805, 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a/eeg_ds000117/sub-07/eeg/sub-07_coordsystem.json +++ b/eeg_ds000117/sub-07/eeg/sub-07_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.075958, 9.2855e-09, 1.1664e-08], - "NAS": [-6.9564e-10, 0.10076, 1.0785e-08], - "RPA": [0.073209, 6.7352e-09, 1.3187e-08] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-07_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.075958, + 9.2855e-09, + 1.1664e-08 + ], + "NAS": [ + -6.9564e-10, + 0.10076, + 1.0785e-08 + ], + "RPA": [ + 0.073209, + 6.7352e-09, + 1.3187e-08 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-07/anat/sub-07_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-08/eeg/sub-08_coordsystem.json b/eeg_ds000117/sub-08/eeg/sub-08_coordsystem.json index 823429ec0..986be2913 100644 --- a/eeg_ds000117/sub-08/eeg/sub-08_coordsystem.json +++ b/eeg_ds000117/sub-08/eeg/sub-08_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.069813, -2.1113e-09, -2.7455e-09], - "NAS": [2.4006e-09, 0.095171, -8.327e-10], - "RPA": [0.06551, 4.0331e-09, -5.523e-10] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-08_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.069813, + -2.1113e-09, + -2.7455e-09 + ], + "NAS": [ + 2.4006e-09, + 0.095171, + -8.327e-10 + ], + "RPA": [ + 0.06551, + 4.0331e-09, + -5.523e-10 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-08/anat/sub-08_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-09/eeg/sub-09_coordsystem.json b/eeg_ds000117/sub-09/eeg/sub-09_coordsystem.json index 57baba836..7af07ca7d 100644 --- a/eeg_ds000117/sub-09/eeg/sub-09_coordsystem.json +++ b/eeg_ds000117/sub-09/eeg/sub-09_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.069531, -2.923e-09, -3.6072e-10], - "NAS": [-4.2431e-09, 0.091441, 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a/eeg_ds000117/sub-10/eeg/sub-10_coordsystem.json +++ b/eeg_ds000117/sub-10/eeg/sub-10_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.066774, -7.9189e-09, -4.9972e-10], - "NAS": [3.829e-09, 0.099563, -4.0023e-10], - "RPA": [0.070321, -7.2794e-09, -1.294e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-10_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.066774, + -7.9189e-09, + -4.9972e-10 + ], + "NAS": [ + 3.829e-09, + 0.099563, + -4.0023e-10 + ], + "RPA": [ + 0.070321, + -7.2794e-09, + -1.294e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-10/anat/sub-10_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-11/eeg/sub-11_coordsystem.json b/eeg_ds000117/sub-11/eeg/sub-11_coordsystem.json index 9883faa05..d5a252977 100644 --- a/eeg_ds000117/sub-11/eeg/sub-11_coordsystem.json +++ b/eeg_ds000117/sub-11/eeg/sub-11_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.070162, 1.3948e-08, -7.516e-09], - "NAS": [-3.3847e-09, 0.092531, -4.7057e-09], - "RPA": [0.07507, -5.8792e-09, -7.8174e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-11_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.070162, + 1.3948e-08, + -7.516e-09 + ], + "NAS": [ + -3.3847e-09, + 0.092531, + -4.7057e-09 + ], + "RPA": [ + 0.07507, + -5.8792e-09, + -7.8174e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-11/anat/sub-11_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-12/eeg/sub-12_coordsystem.json b/eeg_ds000117/sub-12/eeg/sub-12_coordsystem.json index bc6c9fc3a..5da57b6ee 100644 --- a/eeg_ds000117/sub-12/eeg/sub-12_coordsystem.json +++ b/eeg_ds000117/sub-12/eeg/sub-12_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.073547, 4.4318e-09, -8.692e-09], - "NAS": 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a/eeg_ds000117/sub-13/eeg/sub-13_coordsystem.json +++ b/eeg_ds000117/sub-13/eeg/sub-13_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.066552, 1.8215e-08, 9.3072e-09], - "NAS": [4.191e-09, 0.094646, 7.0412e-09], - "RPA": [0.066073, 1.3642e-08, 6.7989e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-13_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": "mm", + "EEGCoordinateSystemDescription": "T1w", + "AnatomicalLandmarkCoordinates": { + "LPA": [ + -0.066552, + 1.8215e-08, + 9.3072e-09 + ], + "NAS": [ + 4.191e-09, + 0.094646, + 7.0412e-09 + ], + "RPA": [ + 0.066073, + 1.3642e-08, + 6.7989e-09 + ] + }, + "AnatomicalLandmarkCoordinateSystem": "Other", + "AnatomicalLandmarkCoordinateUnits": "mm", + "AnatomicalLandmarkCoordinateSystemDescription": "T1w", + "IntendedFor": "bids::sub-13/anat/sub-13_T1w.nii.gz" +} \ No newline at end of file diff --git a/eeg_ds000117/sub-14/eeg/sub-14_coordsystem.json b/eeg_ds000117/sub-14/eeg/sub-14_coordsystem.json index 3c66ab045..eb3cc97b8 100644 --- a/eeg_ds000117/sub-14/eeg/sub-14_coordsystem.json +++ b/eeg_ds000117/sub-14/eeg/sub-14_coordsystem.json @@ -1,14 +1,26 @@ { - "EEGCoordinateSystem": "Other", - "EEGCoordinateUnits": "mm", - "EEGCoordinateSystemDescription": "T1w", - "AnatomicalLandmarkCoordinates": { - "LPA": [-0.072041, 1.8748e-08, -7.324e-10], - "NAS": [-1.7871e-09, 0.093568, -4.061e-09], - "RPA": [0.070207, 1.5703e-08, -2.6709e-09] - }, - "AnatomicalLandmarkCoordinateSystem": "Other", - "AnatomicalLandmarkCoordinateUnits": "mm", - "AnatomicalLandmarkCoordinateSystemDescription": "T1w", - "IntendedFor": "anat/sub-14_T1w.nii.gz" -} + "EEGCoordinateSystem": "Other", + "EEGCoordinateUnits": 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end of file diff --git a/micr_SEM/sub-01/ses-01/micr/sub-01_ses-01_sample-A_photo.json b/micr_SEM/sub-01/ses-01/micr/sub-01_ses-01_sample-A_photo.json index b42e92dbc..6364e6ba6 100644 --- a/micr_SEM/sub-01/ses-01/micr/sub-01_ses-01_sample-A_photo.json +++ b/micr_SEM/sub-01/ses-01/micr/sub-01_ses-01_sample-A_photo.json @@ -1,4 +1,6 @@ -{ - "PhotoDescription": "Description of the photo", - "IntendedFor": ["ses-01/micr/sub-01_ses-01_sample-A_SEM.png"] -} +{ + "PhotoDescription": "Description of the photo", + "IntendedFor": [ + "bids::sub-01/ses-01/micr/sub-01_ses-01_sample-A_SEM.png" + ] +} \ No newline at end of file diff --git a/micr_SEM/sub-01/ses-02/micr/sub-01_ses-02_sample-A_photo.json b/micr_SEM/sub-01/ses-02/micr/sub-01_ses-02_sample-A_photo.json index d538c2ef3..c65fcf5af 100644 --- a/micr_SEM/sub-01/ses-02/micr/sub-01_ses-02_sample-A_photo.json +++ b/micr_SEM/sub-01/ses-02/micr/sub-01_ses-02_sample-A_photo.json @@ -1,4 +1,6 @@ -{ - "PhotoDescription": "Description of the photo", - "IntendedFor": ["ses-02/micr/sub-01_ses-02_sample-A_SEM.png"] -} +{ + "PhotoDescription": "Description of the photo", + "IntendedFor": [ + "bids::sub-01/ses-02/micr/sub-01_ses-02_sample-A_SEM.png" + ] +} \ No newline at end of file diff --git a/micr_SPIM/sub-01/micr/sub-01_sample-A_photo.json b/micr_SPIM/sub-01/micr/sub-01_sample-A_photo.json index e3a4b8935..d73399864 100644 --- a/micr_SPIM/sub-01/micr/sub-01_sample-A_photo.json +++ b/micr_SPIM/sub-01/micr/sub-01_sample-A_photo.json @@ -1,7 +1,9 @@ -{ - "PhotoDescription": "Description of the photo", - "IntendedFor": ["micr/sub-01_sample-A_stain-LFB_chunk-01_SPIM.ome.tif", - "micr/sub-01_sample-A_stain-LFB_chunk-02_SPIM.ome.tif", - "micr/sub-01_sample-A_stain-LFB_chunk-03_SPIM.ome.tif", - "micr/sub-01_sample-A_stain-LFB_chunk-04_SPIM.ome.tif"] -} +{ + "PhotoDescription": "Description of the photo", + "IntendedFor": [ + "bids::sub-01/micr/sub-01_sample-A_stain-LFB_chunk-01_SPIM.ome.tif", + 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"bids::sub-01/micr/sub-01_sample-B_stain-LFB_chunk-02_SPIM.ome.tif", + "bids::sub-01/micr/sub-01_sample-B_stain-LFB_chunk-03_SPIM.ome.tif", + "bids::sub-01/micr/sub-01_sample-B_stain-LFB_chunk-04_SPIM.ome.tif" + ] +} \ No newline at end of file diff --git a/qmri_mp2rageme/sub-1/fmap/sub-1_TB1map.json b/qmri_mp2rageme/sub-1/fmap/sub-1_TB1map.json index 547995a80..6494bc65d 100644 --- a/qmri_mp2rageme/sub-1/fmap/sub-1_TB1map.json +++ b/qmri_mp2rageme/sub-1/fmap/sub-1_TB1map.json @@ -1,14 +1,14 @@ { - "IntendedFor": [ - "anat/sub-1_echo-1_inv-2_part-mag_MP2RAGE.nii", - "anat/sub-1_echo-1_inv-2_part-phase_MP2RAGE.nii", - "anat/sub-1_echo-2_inv-2_part-mag_MP2RAGE.nii", - "anat/sub-1_echo-2_inv-2_part-phase_MP2RAGE.nii", - "anat/sub-1_echo-3_inv-2_part-mag_MP2RAGE.nii", - "anat/sub-1_echo-3_inv-2_part-phase_MP2RAGE.nii", - "anat/sub-1_echo-4_inv-2_part-mag_MP2RAGE.nii", - "anat/sub-1_echo-4_inv-2_part-phase_MP2RAGE.nii", - "anat/sub-1_inv-1_part-mag_MP2RAGE.nii", - "anat/sub-1_inv-1_part-phase_MP2RAGE.nii" - ] -} + "IntendedFor": [ + "bids::sub-1/anat/sub-1_echo-1_inv-2_part-mag_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-1_inv-2_part-phase_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-2_inv-2_part-mag_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-2_inv-2_part-phase_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-3_inv-2_part-mag_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-3_inv-2_part-phase_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-4_inv-2_part-mag_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_echo-4_inv-2_part-phase_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_inv-1_part-mag_MP2RAGE.nii", + "bids::sub-1/anat/sub-1_inv-1_part-phase_MP2RAGE.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_TB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_TB1map.json index b7c73bfa8..ee404d8c8 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_TB1map.json +++ 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"sub-01/fmap/sub-01_echo-2_flip-05_TB1EPI.nii", - "sub-01/fmap/sub-01_echo-2_flip-06_TB1EPI.nii", - "sub-01/fmap/sub-01_echo-2_flip-07_TB1EPI.nii", - "sub-01/fmap/sub-01_echo-2_flip-08_TB1EPI.nii", - "sub-01/fmap/sub-01_echo-2_flip-09_TB1EPI.nii", - "sub-01/fmap/sub-01_echo-2_flip-10_TB1EPI.nii", - "sub-01/fmap/sub-01_echo-2_flip-11_TB1EPI.nii" - ] -} + "IntendedFor": [ + "bids::sub-01/anat/sub-01_PDmap.nii.gz", + "bids::sub-01/anat/sub-01_MTmap.nii.gz", + "bids::sub-01/anat/sub-01_R1map.nii.gz", + "bids::sub-01/anat/sub-01_R2starmap.nii.gz" + ], + "RawSources": [ + "sub-01/fmap/sub-01_echo-1_flip-01_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-02_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-03_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-04_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-05_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-06_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-07_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-08_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-09_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-10_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-1_flip-11_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-01_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-02_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-03_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-04_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-05_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-06_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-07_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-08_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-09_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-10_TB1EPI.nii", + "sub-01/fmap/sub-01_echo-2_flip-11_TB1EPI.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json index 68c544ced..61199508e 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json +++ b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json @@ -1,14 +1,14 @@ { - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" - ], - "RawSources": [ - "sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.nii", - "sub-01/fmap/sub-01_acq-headMTw_RB1COR.nii" - ] -} + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" + ], + "RawSources": [ + "sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.nii", + "sub-01/fmap/sub-01_acq-headMTw_RB1COR.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json index 4d34c98b6..e2bac9de5 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json +++ b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json @@ -1,16 +1,16 @@ { - "IntendedFor": [ - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" - ], - "RawSources": [ - "sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.nii", - "sub-01/fmap/sub-01_acq-headPDw_RB1COR.nii" - ] -} + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" + ], + "RawSources": [ + "sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.nii", + "sub-01/fmap/sub-01_acq-headPDw_RB1COR.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json index afae8b32b..acf6d2241 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json +++ b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json @@ -1,16 +1,16 @@ { - "IntendedFor": [ - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ], - "RawSources": [ - "sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.nii", - "sub-01/fmap/sub-01_acq-headT1w_RB1COR.nii" - ] -} + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ], + "RawSources": [ + "sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.nii", + "sub-01/fmap/sub-01_acq-headT1w_RB1COR.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.json b/qmri_mpm/sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.json index 528f28537..629f1fb13 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.json +++ b/qmri_mpm/sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.json @@ -1,24 +1,24 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "sm3d_1a3d1", - "PulseSequenceDetails": "mfc_smaps_v1a_QBC ", - "RepetitionTimeExcitation": 0.006, - "EchoTime": 0.0022, - "FlipAngle": 6, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "sm3d_1a3d1", + "PulseSequenceDetails": "mfc_smaps_v1a_QBC ", + "RepetitionTimeExcitation": 0.006, + "EchoTime": 0.0022, + "FlipAngle": 6, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.json b/qmri_mpm/sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.json index b15c1ad45..4aef6934c 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.json +++ b/qmri_mpm/sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.json @@ -1,26 +1,26 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "sm3d_1a3d1", - "PulseSequenceDetails": "mfc_smaps_v1a_QBC ", - "RepetitionTimeExcitation": 0.006, - "EchoTime": 0.0022, - "FlipAngle": 6, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "sm3d_1a3d1", + "PulseSequenceDetails": "mfc_smaps_v1a_QBC ", + "RepetitionTimeExcitation": 0.006, + "EchoTime": 0.0022, + "FlipAngle": 6, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.json b/qmri_mpm/sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.json index 5d45c291f..d74d503de 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.json +++ b/qmri_mpm/sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.json @@ -1,26 +1,26 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "sm3d_1a3d1", - "PulseSequenceDetails": "mfc_smaps_v1a_QBC ", - "RepetitionTimeExcitation": 0.006, - "EchoTime": 0.0022, - "FlipAngle": 6, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "sm3d_1a3d1", + "PulseSequenceDetails": "mfc_smaps_v1a_QBC ", + "RepetitionTimeExcitation": 0.006, + "EchoTime": 0.0022, + "FlipAngle": 6, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_acq-headMTw_RB1COR.json b/qmri_mpm/sub-01/fmap/sub-01_acq-headMTw_RB1COR.json index 84b8a6d61..6316be629 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_acq-headMTw_RB1COR.json +++ b/qmri_mpm/sub-01/fmap/sub-01_acq-headMTw_RB1COR.json @@ -1,24 +1,24 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "sm3d_1a3d1", - "PulseSequenceDetails": "mfc_smaps_v1a_Array ", - "RepetitionTimeExcitation": 0.006, - "EchoTime": 0.0022, - "FlipAngle": 6, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "sm3d_1a3d1", + "PulseSequenceDetails": "mfc_smaps_v1a_Array ", + "RepetitionTimeExcitation": 0.006, + "EchoTime": 0.0022, + "FlipAngle": 6, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_acq-headPDw_RB1COR.json b/qmri_mpm/sub-01/fmap/sub-01_acq-headPDw_RB1COR.json index ea0dfc3e2..85c7c40d5 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_acq-headPDw_RB1COR.json +++ b/qmri_mpm/sub-01/fmap/sub-01_acq-headPDw_RB1COR.json @@ -1,26 +1,26 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "sm3d_1a3d1", - "PulseSequenceDetails": "mfc_smaps_v1a_Array ", - "RepetitionTimeExcitation": 0.006, - "EchoTime": 0.0022, - "FlipAngle": 6, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "sm3d_1a3d1", + "PulseSequenceDetails": "mfc_smaps_v1a_Array ", + "RepetitionTimeExcitation": 0.006, + "EchoTime": 0.0022, + "FlipAngle": 6, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_acq-headT1w_RB1COR.json b/qmri_mpm/sub-01/fmap/sub-01_acq-headT1w_RB1COR.json index 6fd222375..24ce1e3f6 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_acq-headT1w_RB1COR.json +++ b/qmri_mpm/sub-01/fmap/sub-01_acq-headT1w_RB1COR.json @@ -1,26 +1,26 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "sm3d_1a3d1", - "PulseSequenceDetails": "mfc_smaps_v1a_Array ", - "RepetitionTimeExcitation": 0.006, - "EchoTime": 0.0022, - "FlipAngle": 6, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "sm3d_1a3d1", + "PulseSequenceDetails": "mfc_smaps_v1a_Array ", + "RepetitionTimeExcitation": 0.006, + "EchoTime": 0.0022, + "FlipAngle": 6, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-01_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-01_TB1EPI.json index e20ae84c4..22ffff488 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-01_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-01_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 65, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 65, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-02_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-02_TB1EPI.json index 3969be218..3a70a9191 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-02_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-02_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 70, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 70, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-03_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-03_TB1EPI.json index a3e606115..a7221e202 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-03_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-03_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - 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"anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 75, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-04_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-04_TB1EPI.json index de13e2d8c..026197445 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-04_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-04_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 80, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 80, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-05_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-05_TB1EPI.json index a6f5298f9..c0e86a22a 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-05_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-05_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 85, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 85, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-06_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-06_TB1EPI.json index 55dd8db41..756bbce58 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-06_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-06_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 90, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 90, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-07_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-07_TB1EPI.json index 8d1d4d4a7..73779ca59 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-07_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-07_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 95, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 95, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-08_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-08_TB1EPI.json index 009b337ad..c5c1348a3 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-08_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-08_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 100, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 100, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-09_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-09_TB1EPI.json index 3b2427fe7..4b1b0b776 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-09_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-09_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 105, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 105, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-10_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-10_TB1EPI.json index e8c5233cd..74da88929 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-10_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-10_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - 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"anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 110, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-11_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-11_TB1EPI.json index 918fae184..f90e6921b 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-11_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-1_flip-11_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.03906, - "FlipAngle": 115, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.03906, + "FlipAngle": 115, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-01_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-01_TB1EPI.json index 98bfb8cc6..b134b4b91 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-01_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-01_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 65, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 65, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-02_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-02_TB1EPI.json index 55f1121d1..e426a2003 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-02_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-02_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 70, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 70, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-03_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-03_TB1EPI.json index 68f8b4ab6..98e000ac0 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-03_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-03_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 75, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 75, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-04_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-04_TB1EPI.json index 6ec3c22ec..581f333b1 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-04_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-04_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 80, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", 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"anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 80, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + 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"bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-05_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-05_TB1EPI.json index 00a8da5ac..6ef02808c 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-05_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-05_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - 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"anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 85, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-06_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-06_TB1EPI.json index aa2a3b510..d4c858f9a 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-06_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-06_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - 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"anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 90, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-07_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-07_TB1EPI.json index 446b66cf2..905efaa08 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-07_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-07_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": 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"anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + 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"bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-08_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-08_TB1EPI.json index bd68524fe..6ee54a0dd 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-08_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-08_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 100, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 100, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-09_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-09_TB1EPI.json index 7d52e7ced..ec17aaa23 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-09_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-09_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 105, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 105, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-10_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-10_TB1EPI.json index fe55c9fa3..defe13c98 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-10_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-10_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 110, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", - "MixingTime": 0.0338, - "SpoilingRFPhaseIncrement": 50, - "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 110, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-11_TB1EPI.json b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-11_TB1EPI.json index c687e1f45..cbbe12dab 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-11_TB1EPI.json +++ b/qmri_mpm/sub-01/fmap/sub-01_echo-2_flip-11_TB1EPI.json @@ -1,43 +1,43 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "RM", - "SequenceName": "seste1d3d2", - "PulseSequenceDetails": "mfc_seste_b1map_v1e ", - "RepetitionTimeExcitation": 0.5, - "EchoTime": 0.13, - "FlipAngle": 115, - "MTState": false, - "NumberShots": 11, - "TotalReadoutTime": 6720.006240000001, - "PhaseEncodingDirection": "j", 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"anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "RM", + "SequenceName": "seste1d3d2", + "PulseSequenceDetails": "mfc_seste_b1map_v1e ", + "RepetitionTimeExcitation": 0.5, + "EchoTime": 0.13, + "FlipAngle": 115, + "MTState": false, + "NumberShots": 11, + "TotalReadoutTime": 6720.006240000001, + "PhaseEncodingDirection": "j", + "MixingTime": 0.0338, + "SpoilingRFPhaseIncrement": 50, + "IntendedFor": [ + "bids::sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids::sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_magnitude1.json b/qmri_mpm/sub-01/fmap/sub-01_magnitude1.json index 3a762fa4d..f08bca773 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_magnitude1.json +++ b/qmri_mpm/sub-01/fmap/sub-01_magnitude1.json @@ -1,24 +1,24 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "GR", - "SequenceName": "*fm2d2r ", - "PulseSequenceDetails": "gre_field_mapping_1acq_rl ", - "RepetitionTimeExcitation": 1.02, - "EchoTime": 0.01, - "FlipAngle": 90, - "MTState": false, - 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"bids::sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_magnitude2.json b/qmri_mpm/sub-01/fmap/sub-01_magnitude2.json index af5eff1af..77138e016 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_magnitude2.json +++ b/qmri_mpm/sub-01/fmap/sub-01_magnitude2.json @@ -1,24 +1,24 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "GR", - "SequenceName": "*fm2d2r ", - "PulseSequenceDetails": "gre_field_mapping_1acq_rl ", - "RepetitionTimeExcitation": 1.02, - "EchoTime": 0.01246, - "FlipAngle": 90, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "fmap/sub-01_acq-headMTw_RB1COR.nii", - "fmap/sub-01_acq-headPDw_RB1COR.nii", - "fmap/sub-01_acq-headT1w_RB1COR.nii", - "fmap/sub-01_acq-bodyMTw_RB1COR.nii", - "fmap/sub-01_acq-bodyPDw_RB1COR.nii", - "fmap/sub-01_acq-bodyT1w_RB1COR.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "GR", + "SequenceName": "*fm2d2r ", + "PulseSequenceDetails": "gre_field_mapping_1acq_rl ", + "RepetitionTimeExcitation": 1.02, + "EchoTime": 0.01246, + "FlipAngle": 90, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/fmap/sub-01_acq-headMTw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-headPDw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-headT1w_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.nii" + ] +} \ No newline at end of file diff --git a/qmri_mpm/sub-01/fmap/sub-01_phasediff.json b/qmri_mpm/sub-01/fmap/sub-01_phasediff.json index c902e7d71..c46bd07d2 100644 --- a/qmri_mpm/sub-01/fmap/sub-01_phasediff.json +++ b/qmri_mpm/sub-01/fmap/sub-01_phasediff.json @@ -1,25 +1,25 @@ { - "Manufacturer": "SIEMENS ", - "ManufacturersModelName": "Prisma_fit", - "DeviceSerialNumber": "167025", - "StationName": "MRC35437", - "MagneticFieldStrength": 3, - "ScanningSequence": "GR", - "SequenceName": "*fm2d2r ", - "PulseSequenceDetails": "gre_field_mapping_1acq_rl ", - "RepetitionTimeExcitation": 1.02, - "EchoTime1": 0.01246, - "EchoTime2": 0.02, - "FlipAngle": 90, - "MTState": false, - "NumberShots": 1, - "PhaseEncodingDirection": "j", - "IntendedFor": [ - "fmap/sub-01_acq-headMTw_RB1COR.nii", - "fmap/sub-01_acq-headPDw_RB1COR.nii", - "fmap/sub-01_acq-headT1w_RB1COR.nii", - "fmap/sub-01_acq-bodyMTw_RB1COR.nii", - "fmap/sub-01_acq-bodyPDw_RB1COR.nii", - "fmap/sub-01_acq-bodyT1w_RB1COR.nii" - ] -} + "Manufacturer": "SIEMENS ", + "ManufacturersModelName": "Prisma_fit", + "DeviceSerialNumber": "167025", + "StationName": "MRC35437", + "MagneticFieldStrength": 3, + "ScanningSequence": "GR", + "SequenceName": "*fm2d2r ", + "PulseSequenceDetails": "gre_field_mapping_1acq_rl ", + "RepetitionTimeExcitation": 1.02, + "EchoTime1": 0.01246, + "EchoTime2": 0.02, + "FlipAngle": 90, + "MTState": false, + "NumberShots": 1, + "PhaseEncodingDirection": "j", + "IntendedFor": [ + "bids::sub-01/fmap/sub-01_acq-headMTw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-headPDw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-headT1w_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.nii", + "bids::sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.nii" + ] +} \ No newline at end of file diff --git a/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json b/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json index 62d0042db..269260b1a 100644 --- a/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json +++ b/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json @@ -1,22 +1,24 @@ { - "RawSources": [ - "sub-01/fmap/sub-01_flip-01_TB1DAM.nii.gz", - "sub-01/fmap/sub-01_flip-02_TB1DAM.nii.gz" - ], - "IntendedFor": [ - "anat/sub-01_T1map.nii.gz" - ], - "MagneticFieldStrength": "3", - "Manufacturer": "Siemens", - "ManufacturerModelName": "Skyra", - "MRAcquisitionType": "3D", - "PulseSequenceType": "SPGR", - "FlipAngle": ["60","120"], - "EstimationPaper": "Insko et. al. 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JMRI, 1993", + "EstimationAlgorithm": "Linear", + "EstimationSoftwareName": "qMRLab", + "EstimationSoftwareLanguage": "MATLAB", + "EstimationSoftwareVersion": "2.4.1", + "EstimationSoftwareEnv": "OSX 10.14" +} \ No newline at end of file diff --git a/qmri_mtsat/sub-01/fmap/sub-01_flip-1_TB1DAM.json b/qmri_mtsat/sub-01/fmap/sub-01_flip-1_TB1DAM.json index 64b60eb02..1e8e751c3 100644 --- a/qmri_mtsat/sub-01/fmap/sub-01_flip-1_TB1DAM.json +++ b/qmri_mtsat/sub-01/fmap/sub-01_flip-1_TB1DAM.json @@ -1,8 +1,8 @@ { - "IntendedFor": [ - "anat/sub-01_flip-1_mt-off_MTS.nii.gz", - "anat/sub-01_flip-1_mt-on_MTS.nii.gz", - "anat/sub-01_flip-2_mt-off_MTS.nii.gz" - ], - "FlipAngle": "60" -} + "IntendedFor": [ + "bids::sub-01/anat/sub-01_flip-1_mt-off_MTS.nii.gz", + "bids::sub-01/anat/sub-01_flip-1_mt-on_MTS.nii.gz", + "bids::sub-01/anat/sub-01_flip-2_mt-off_MTS.nii.gz" + ], + "FlipAngle": "60" +} \ No newline at end of file diff --git a/qmri_mtsat/sub-01/fmap/sub-01_flip-2_TB1DAM.json b/qmri_mtsat/sub-01/fmap/sub-01_flip-2_TB1DAM.json index 76752713b..53bcc528f 100644 --- a/qmri_mtsat/sub-01/fmap/sub-01_flip-2_TB1DAM.json +++ b/qmri_mtsat/sub-01/fmap/sub-01_flip-2_TB1DAM.json @@ -1,8 +1,8 @@ { - "IntendedFor": [ - "anat/sub-01_flip-1_mt-off_MTS.nii.gz", - "anat/sub-01_flip-1_mt-on_MTS.nii.gz", - "anat/sub-01_flip-2_mt-off_MTS.nii.gz" - ], - "FlipAngle": "120" -} + "IntendedFor": [ + "bids::sub-01/anat/sub-01_flip-1_mt-off_MTS.nii.gz", + "bids::sub-01/anat/sub-01_flip-1_mt-on_MTS.nii.gz", + "bids::sub-01/anat/sub-01_flip-2_mt-off_MTS.nii.gz" + ], + "FlipAngle": "120" +} \ No newline at end of file diff --git a/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json b/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json index 2b03b7ed8..ca9f15e29 100644 --- a/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json +++ b/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json @@ -1,22 +1,31 @@ -{ "RawSources": [ - "sub-01/fmap/sub-01_acq-tr1_TB1AFI.nii.gz", - "sub-01/fmap/sub-01_acq-tr2_TB1AFI.nii.gz" - ], - "IntendedFor": [ - "anat/sub-01_T1map.nii.gz" - ], - "MagneticFieldStrength": "3", - "Manufacturer": "Siemens", - "ManufacturerModelName": "Skyra", - "MRAcquisitionType": "3D", - "PulseSequenceType": "SPGR", - "RepetitionTime": ["0.02","0.1"], - "SpoilingState": true, - "SpoilingType": "COMBINED", - "SpoilingGradientMoment": ["0.540","2.250"], - "SpoilingGradientDuration": ["0.1244","0.0622"], - "SpoilingRFPhaseIncrement": "39", - "FlipAngle": "60", - "EchoTime": "0.032" - } - \ No newline at end of file +{ + "RawSources": [ + "sub-01/fmap/sub-01_acq-tr1_TB1AFI.nii.gz", + "sub-01/fmap/sub-01_acq-tr2_TB1AFI.nii.gz" + ], + "IntendedFor": [ + "bids::sub-01/anat/sub-01_T1map.nii.gz" + ], + "MagneticFieldStrength": "3", + "Manufacturer": "Siemens", + "ManufacturerModelName": "Skyra", + "MRAcquisitionType": "3D", + "PulseSequenceType": "SPGR", + "RepetitionTime": [ + "0.02", + "0.1" + ], + "SpoilingState": true, + "SpoilingType": "COMBINED", + "SpoilingGradientMoment": [ + "0.540", + "2.250" + ], + "SpoilingGradientDuration": [ + "0.1244", + "0.0622" + ], + "SpoilingRFPhaseIncrement": "39", + "FlipAngle": "60", + "EchoTime": "0.032" +} \ No newline at end of file