{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":3769753,"defaultBranch":"master","name":"abyss","ownerLogin":"bcgsc","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2012-03-19T23:13:39.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2319317?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712612249.0","currentOid":""},"activityList":{"items":[{"before":"1052839dd53c40bb3ae5518c0c0a3092c1d9600a","after":"492a27fa53b16915b90347f737cbfdde5d4c2a37","ref":"refs/heads/tlo","pushedAt":"2024-04-11T04:16:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"add tlo flags","shortMessageHtmlLink":"add tlo flags"}},{"before":null,"after":"1052839dd53c40bb3ae5518c0c0a3092c1d9600a","ref":"refs/heads/tlo","pushedAt":"2024-04-08T21:37:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"disable deprecated error and change type","shortMessageHtmlLink":"disable deprecated error and change type"}},{"before":"2b42191b1e3510a2cc3a79f1052b5f975a0eb9bc","after":"6548e04546dfc2239faee5b52fdb01dd31ed7995","ref":"refs/heads/master","pushedAt":"2024-03-19T20:19:11.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"configure: simplify check for GHC (#475)\n\nThis tool lookup and included AM_CONDITIIONAL was originally added in\r\ncommit 73b5e40098b56b982d45e491e149d22ae7f0099a, using the same logic\r\nintroduced in this commit. It was originally changed in commit\r\n95558c6472ea52573c3487229de5ef7e1ec979d6 to avoid checking whether GHC\r\nwas found, and instead check whether ghc-pkg claimed mmap was found.\r\n\r\nA long time later, the use of ghc-pkg was removed in commit\r\ne7a3741f455a9d6e3a4a6bddcb411097fe9e7036, and the check was restored to\r\n\"check if GHC exists\", which however did not restore the *mechanism*\r\nfor checking.\r\n\r\nInstead, it attempted to run GHC, whether it existed or not. Checking if\r\nit was found should be enough. But checking that it runs --version is\r\nnot particularly useful:\r\n- a command not found / permission denied error is produced if GHC was\r\n not found, due to trying to execute \"\" as a command:\r\n\r\n ./configure: 7028: : Permission denied\r\n\r\n- if it was found, the version output would be interspersed into\r\n ./configure output\r\n\r\nSimilarly a couple lines below, pandoc is checked for and only its\r\npresence is cared about.","shortMessageHtmlLink":"configure: simplify check for GHC (#475)"}},{"before":"485af3fef198eee8cfb327849963adc0cc7ab705","after":null,"ref":"refs/heads/test_ci","pushedAt":"2024-03-19T16:43:34.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"b23abfc3db51bf7eca5feea4dd2ec110a74489ea","after":"2b42191b1e3510a2cc3a79f1052b5f975a0eb9bc","ref":"refs/heads/master","pushedAt":"2024-03-19T16:43:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Fix CI (#476)\n\n* Update btllib version, remove 2to3 for brew, compile btllib from source for mac_latest-compilers-clang\r\n\r\n* Another fix for brew installs, add meson/ninja installs\r\n\r\n* Remove outdated test, update conda installs\r\n\r\n* Update btllib\r\n\r\n* Ignoring dangling-reference","shortMessageHtmlLink":"Fix CI (#476)"}},{"before":"42a762dd75890c49adac3d5b9fdbe7e0600689c0","after":"485af3fef198eee8cfb327849963adc0cc7ab705","ref":"refs/heads/test_ci","pushedAt":"2024-03-15T20:46:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add back all other tests","shortMessageHtmlLink":"Add back all other tests"}},{"before":"fe1ea4b3868083438834c3a4bff9b4ec18118fbc","after":"42a762dd75890c49adac3d5b9fdbe7e0600689c0","ref":"refs/heads/test_ci","pushedAt":"2024-03-15T20:01:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Ignore dangling reference","shortMessageHtmlLink":"Ignore dangling reference"}},{"before":"680fc025159c4ce36353ed57d12c2f7d111e42b0","after":"fe1ea4b3868083438834c3a4bff9b4ec18118fbc","ref":"refs/heads/test_ci","pushedAt":"2024-03-15T19:40:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"And again","shortMessageHtmlLink":"And again"}},{"before":"0b6382b5da69915cde4c08c03f9c5f5893474129","after":"680fc025159c4ce36353ed57d12c2f7d111e42b0","ref":"refs/heads/test_ci","pushedAt":"2024-03-15T19:29:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Proper commit of code..","shortMessageHtmlLink":"Proper commit of code.."}},{"before":"4ae047cd4296150d72ddbd34e3736845ac00d747","after":"0b6382b5da69915cde4c08c03f9c5f5893474129","ref":"refs/heads/test_ci","pushedAt":"2024-03-15T19:14:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try reverting to 1.5.1","shortMessageHtmlLink":"Try reverting to 1.5.1"}},{"before":"03a49c0c06efd22258e544d96917b6b067b5dfa5","after":"4ae047cd4296150d72ddbd34e3736845ac00d747","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T22:36:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Remove successful tests, try ignoring dangling-reference","shortMessageHtmlLink":"Remove successful tests, try ignoring dangling-reference"}},{"before":"3606cdb6791a03f491446c9a232199c18a170b55","after":"03a49c0c06efd22258e544d96917b6b067b5dfa5","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T22:11:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add brewsci/bio reference","shortMessageHtmlLink":"Add brewsci/bio reference"}},{"before":"6d301cee7e7ddb895bfe1181420a4b56beca3fc3","after":"3606cdb6791a03f491446c9a232199c18a170b55","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T22:01:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try using brew btllib","shortMessageHtmlLink":"Try using brew btllib"}},{"before":"4ec45b96a4564c8a92faa299a426ab380fa15207","after":"6d301cee7e7ddb895bfe1181420a4b56beca3fc3","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T21:44:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try gcc-13 from brew","shortMessageHtmlLink":"Try gcc-13 from brew"}},{"before":"e3fd4651f03cf1fd0d6ada2efdc1a01fd67ca594","after":"4ec45b96a4564c8a92faa299a426ab380fa15207","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T21:18:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try downgrading btllib","shortMessageHtmlLink":"Try downgrading btllib"}},{"before":"13ef6aae92830548d17cae4e232c236421fa28e4","after":"e3fd4651f03cf1fd0d6ada2efdc1a01fd67ca594","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T20:46:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add node to brew linking manipulation, try downgrading btllib","shortMessageHtmlLink":"Add node to brew linking manipulation, try downgrading btllib"}},{"before":"86986f4a23b469d403be2a48f9c38f184bdbdfe4","after":"13ef6aae92830548d17cae4e232c236421fa28e4","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T19:34:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try brew unlinking","shortMessageHtmlLink":"Try brew unlinking"}},{"before":"64b0b93a5508476235967b7d805a3ec9c1bdc7ed","after":"86986f4a23b469d403be2a48f9c38f184bdbdfe4","ref":"refs/heads/test_ci","pushedAt":"2024-03-13T18:28:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"correct btllib URLs","shortMessageHtmlLink":"correct btllib URLs"}},{"before":"e989693ff110552e1c587478dca1d9ab50d56325","after":"64b0b93a5508476235967b7d805a3ec9c1bdc7ed","ref":"refs/heads/test_ci","pushedAt":"2024-03-12T22:25:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update btllib, hack for mac_latest_gcc","shortMessageHtmlLink":"Update btllib, hack for mac_latest_gcc"}},{"before":"0f0d28bb1d8cd3eb67a922503f3e1cf9dd5cf96a","after":"e989693ff110552e1c587478dca1d9ab50d56325","ref":"refs/heads/test_ci","pushedAt":"2024-03-12T22:11:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Remove outdated test, update conda installs","shortMessageHtmlLink":"Remove outdated test, update conda installs"}},{"before":"0dbd325d30ca9bf3973f4f8af21136bf65cebfe2","after":"0f0d28bb1d8cd3eb67a922503f3e1cf9dd5cf96a","ref":"refs/heads/test_ci","pushedAt":"2024-03-11T20:14:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Another fix for brew installs, add meson/ninja installs","shortMessageHtmlLink":"Another fix for brew installs, add meson/ninja installs"}},{"before":"c30ef107ec60a115a32d46485fe5c0fdfa58ebad","after":"0dbd325d30ca9bf3973f4f8af21136bf65cebfe2","ref":"refs/heads/test_ci","pushedAt":"2024-03-11T20:04:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update btllib version, remove 2to3 for brew, compile btllib from source for mac_latest-compilers-clang","shortMessageHtmlLink":"Update btllib version, remove 2to3 for brew, compile btllib from sour…"}},{"before":null,"after":"c30ef107ec60a115a32d46485fe5c0fdfa58ebad","ref":"refs/heads/test_ci","pushedAt":"2024-03-11T19:45:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Testing CI","shortMessageHtmlLink":"Testing CI"}},{"before":"8e9bb55e7774d7b483d484530890af5e509892df","after":null,"ref":"refs/heads/lcoombe-patch-1","pushedAt":"2023-09-01T22:25:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"42bb25076d2890076362dff441f34bae587f70be","after":"b23abfc3db51bf7eca5feea4dd2ec110a74489ea","ref":"refs/heads/master","pushedAt":"2023-09-01T22:25:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update README.md (#471)\n\n* Update README.md\r\n\r\nWe've noticed locally some issues can come up if conda-forge isn't part of the channel list\r\nJust adding it in the conda install command in case\r\n\r\n* CI Fixes","shortMessageHtmlLink":"Update README.md (#471)"}},{"before":"06fabac970300a8cc6765b055cfdf989dc3ae275","after":"8e9bb55e7774d7b483d484530890af5e509892df","ref":"refs/heads/lcoombe-patch-1","pushedAt":"2023-09-01T21:44:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Squashed commit of the following:\n\ncommit 6a64d8cc282a98ea600e31302da37c4c637bc225\nAuthor: lcoombe \nDate: Fri Sep 1 13:23:11 2023 -0700\n\n Add back other tests\n\ncommit 055883c02fa65b31e451be84be5bf18cce27dfcc\nAuthor: lcoombe \nDate: Fri Sep 1 12:00:42 2023 -0700\n\n Try no brew update\n\ncommit 9021bb2bcae4c089dc94964fcad2256d00f6eb6a\nAuthor: lcoombe \nDate: Fri Sep 1 11:49:42 2023 -0700\n\n Change mac VM\n\ncommit dabbe33739ef53caaa3e522e3182ff247ae0366b\nAuthor: lcoombe \nDate: Fri Sep 1 09:52:04 2023 -0700\n\n Bugfixes\n\ncommit 6966746138702fdd906de23d6e59530604cbb4cc\nAuthor: lcoombe \nDate: Fri Sep 1 09:35:07 2023 -0700\n\n more btllib install from source, bugfixes\n\ncommit 9b18bec3be808ce830af6e8f3a6b347b30a1c68f\nAuthor: lcoombe \nDate: Thu Aug 31 15:54:41 2023 -0700\n\n Syntax fix, try to avoid error\n\ncommit 72993eac4537f34162333fca9db063eb1734a32e\nAuthor: lcoombe \nDate: Thu Aug 31 15:41:39 2023 -0700\n\n Try CI fixes","shortMessageHtmlLink":"Squashed commit of the following:"}},{"before":"055883c02fa65b31e451be84be5bf18cce27dfcc","after":"6a64d8cc282a98ea600e31302da37c4c637bc225","ref":"refs/heads/ci_fix","pushedAt":"2023-09-01T20:23:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add back other tests","shortMessageHtmlLink":"Add back other tests"}},{"before":"9021bb2bcae4c089dc94964fcad2256d00f6eb6a","after":"055883c02fa65b31e451be84be5bf18cce27dfcc","ref":"refs/heads/ci_fix","pushedAt":"2023-09-01T19:00:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try no brew update","shortMessageHtmlLink":"Try no brew update"}},{"before":"dabbe33739ef53caaa3e522e3182ff247ae0366b","after":"9021bb2bcae4c089dc94964fcad2256d00f6eb6a","ref":"refs/heads/ci_fix","pushedAt":"2023-09-01T18:49:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Change mac VM","shortMessageHtmlLink":"Change mac VM"}},{"before":"6966746138702fdd906de23d6e59530604cbb4cc","after":"dabbe33739ef53caaa3e522e3182ff247ae0366b","ref":"refs/heads/ci_fix","pushedAt":"2023-09-01T16:52:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Bugfixes","shortMessageHtmlLink":"Bugfixes"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAELbNpcQA","startCursor":null,"endCursor":null}},"title":"Activity · bcgsc/abyss"}