pyproject.toml

[build-system]
requires = [
    "setuptools",
    "setuptools-scm",
]
build-backend = "setuptools.build_meta"

[project]
name = "fusilli"
authors = [
    { name = "Florence J Townend", email = "f.j.townend@live.com" },
]
description = "Comparing multi-modal data fusion methods. Don't be silly, use Fusilli!"
readme = "README.md"
requires-python = ">=3.7"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]
keywords = ["multi-modal", "machine learning", "MRI", "data fusion", "multi-view", "graph neural network", "attention", "VAE"]
dependencies = [
    "lightning~=2.0",
    "matplotlib~=3.5",
    "numpy~=1.25",
    "pandas~=2.0",
    "scikit-learn~=1.0",
    "setuptools~=68.0",
    "torch~=2.0",
    "torch-geometric~=2.0",
    "torchmetrics~=0.0",
    "tqdm~=4.0",
    "wandb~=0.0",
]
optional-dependencies = { docs = [
    "protobuf~=3.0",
    "sphinx",
    "sphinx-gallery",
    "sphinx-rtd-theme",
    "sphinx-wagtail-theme",
    "sphinxcontrib-applehelp",
    "sphinxcontrib-devhelp",
    "sphinxcontrib-htmlhelp",
    "sphinxcontrib-jquery",
    "sphinxcontrib-jsmath",
    "sphinxcontrib-qthelp",
    "sphinxcontrib-serializinghtml",
    "renku-sphinx-theme",
] }
dynamic = [
    "version",
]

[tool.pytest.ini_options]
testpaths = ["tests"]
filterwarnings = [
    "ignore:MPS available but not used*:UserWarning",
    "ignore:GPU available but not used*:UserWarning",
    "ignore:Layer group*:UserWarning",
    "ignore:.*Use Resampling.*:DeprecationWarning",
    "ignore:.*The 'warn' method is deprecated*:DeprecationWarning",
    "ignore:.*np.find_common_type is deprecated*:DeprecationWarning",
    "ignore:.*pkg_resources*:DeprecationWarning",
]

[tool.coverage.run]
omit = [
    "*__init__*",
    "fusilli/utils/mcvae/*",
]

[tool.setuptools_scm]
local_scheme = "no-local-version"
write_to = "fusilli/_version.py"