Consider adding kgcl bindings #180

cmungall · 2022-07-06T23:47:12Z

KGCL is a proposed standard for representing changes to ontologies. See:

There are currently bindings for this and rdflib:

https://github.com/INCATools/kgcl-rdflib

It would be great to have pronto bindings - meaning people could just send a KGCL file to an obo file and have it update

Understandable if you don't want the dependency in this repo; it brings in rdflib and others...

options:

kgcl bindings live in this repo
there is a separate kgcl-pronto lib, analogous to the rdflib one
the bindings like in OAK, which acts as a big uber wrapper

I am going with 3 for now but happy to have them anywhere

These may move to another package - see althonos/pronto#180

* Adding bindings for kgcl-rdflib * recognizing ofn suffix and rdflib prefix * Adding some preliminary KGCL bindings. These may move to another package - see althonos/pronto#180 * fixing signature * adding skos definition * Adding an apply command for applying KGCL patches Adding a KGCL diff Rationalizing other commands * kgcl * diffs * lint * poetry update * plac8 flake8 * plac8 flake8 * plac8 flake8

cmungall added a commit to INCATools/ontology-access-kit that referenced this issue Jul 6, 2022

Adding some preliminary KGCL bindings.

39a7a09

These may move to another package - see althonos/pronto#180

cmungall mentioned this issue Jul 6, 2022

Adding KGCL support via kgcl-rdflib INCATools/ontology-access-kit#164

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Consider adding kgcl bindings #180

Consider adding kgcl bindings #180

cmungall commented Jul 6, 2022 •

edited

Consider adding kgcl bindings #180

Consider adding kgcl bindings #180

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cmungall commented Jul 6, 2022 • edited

cmungall commented Jul 6, 2022 •

edited