Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How can we handle few missing time indices in featuretools? Even one missing timestamp in the time index leads to all time based features being null #2700

Open
nitinmnsn opened this issue Apr 3, 2024 · 0 comments
Labels
bug Something isn't working

Comments

@nitinmnsn
Copy link

Many times it so happens that you do not have the time index of a data entry and a lot of other features are present. However, the time index is still present in a lot of the cases and thus the time based features could and should be computed.

I am not finding a way to create such features using featuretools. All the created features are NaN

Example:

from datetime import timedelta
import featuretools as ft
import pandas as pd
import numpy as np
from featuretools import Timedelta

tw = Timedelta(3, unit = "d")
ts = pd.to_datetime("01-01-2020 01:00:00")
time_index = list(pd.date_range(ts, ts + timedelta(hours = 168), periods = 8, inclusive = 'both'))
time_index[4] = np.nan#np.datetime64("NaT")
df1 = pd.DataFrame({'ind': [1], 'time': ts})
df2 = pd.DataFrame({'ind':[1,2,3,4,5,6,7,8], 'id':[1,1,1,1,1,1,1,1], 'time': time_index, 'feat': [np.nan,1,2,4,8,16,48,144]})
es = ft.EntitySet('es')
es.add_dataframe(df1, index = 'ind', dataframe_name = 'base', time_index = 'time')
es.add_dataframe(df2, index = 'ind', dataframe_name = 'data', time_index = 'time')
es.add_relationship('base','ind','data','id')
ct = pd.DataFrame({"instance_id":[1,1,1], "time":[time_index[-1], time_index[-2], time_index[-3]]})
es.add_last_time_indexes()
ft.dfs(entityset = es,  target_dataframe_name = 'base', agg_primitives=['trend'], 
       trans_primitives=[], cutoff_time=ct, cutoff_time_in_index=True, training_window = tw)[0].sort_index()

The output is all Null features. However, if I comment out the one line setting one of the time indices to 0 (time_index[4] = np.nan#np.datetime64("NaT")) then, we can see that the features are getting generated just fine.

How can we handle missing time indices in featuretools?

Output of featuretools.show_info()

Featuretools version: 1.30.0
Featuretools installation directory: /home/nitin/miniconda3/envs/dst/lib/python3.10/site-packages/featuretools

SYSTEM INFO

python: 3.10.13.final.0
python-bits: 64
OS: Linux
OS-release: 6.5.0-26-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_IN
LOCALE: en_IN.ISO8859-1

INSTALLED VERSIONS

numpy: 1.26.4
pandas: 2.2.1
tqdm: 4.65.0
cloudpickle: 2.2.1
dask: 2023.10.1
psutil: 5.9.8
pip: 23.3.1
setuptools: 68.2.2

@nitinmnsn nitinmnsn added the bug Something isn't working label Apr 3, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

1 participant