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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
import io
import os
import re
from setuptools import setup, find_packages
classifiers = """\
Development Status :: 4 - Beta
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3.4
Programming Language :: Python :: 3.5
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
"""
def _read(*parts, **kwargs):
filepath = os.path.join(os.path.dirname(__file__), *parts)
encoding = kwargs.pop('encoding', 'utf-8')
with io.open(filepath, encoding=encoding) as fh:
text = fh.read()
return text
def get_version():
version = re.search(
r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]',
_read('avTAD', '_version.py'),
re.MULTILINE).group(1)
return version
def get_long_description():
return _read('README.md')
def get_requirements():
requirements = []
with open('requirements.txt') as f:
requirements = f.read().splitlines()
return requirements
tests_require = [
'pytest'
]
setup(
name='avTAD',
author='Aleksandra Galitsyna',
author_email='[email protected]',
version=get_version(),
license='BSD',
description='Sparse binary format for genomic interaction matrices',
long_description=get_long_description(),
long_description_content_type='text/markdown',
keywords=['genomics', 'bioinformatics', 'Hi-C', 'chromatin', 'TADs'],
url='https://github.com/agalitsyna/avTAD',
packages=find_packages(),
zip_safe=False,
classifiers=[s.strip() for s in classifiers.split('\n') if s],
install_requires=get_requirements(),
tests_require=tests_require,
entry_points={
'console_scripts': [
'avTAD = avTAD.cli:cli',
]
}
)