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Request for conda package of GISAIDR #46
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Great idea! I'll look into adding the conda package command to run when a new release is made. In the mean time I think (haven't tried) you can use post-deployment-scripts to install an R package into the env automatically. |
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Hi Wytamma,
I've written a snakemake pipeline that uses
GISAIDR
. Pipeline installation requires manually running:This could be automated in R with a function that checks if GISAIDR is installed and then installs it if required. But I think a simpler method would be a custom conda package in personal repo.
From here, we can build a conda package by running:
(I am authenticated with anaconda.org so there's some magic happening to upload it to my repo)
This build of
GISAIDR
was uploaded to my conda channel and can be installed with:Not sure how much work is required to get this automated into github actions so the build step is insync with new versions of gisaidr.
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