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Download returns strain names with spaces removed #41

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Wytamma opened this issue Apr 11, 2023 · 0 comments

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Wytamma commented Apr 11, 2023

The query() function returns strain names with spaces intact, as expected:

Returning 0-50 of 65 entries.
> df$virus_name[1]
[1] "hCoV-19/New Caledonie/IPP03868/2022"

However, download() returns strain names with the spaces removed:

> dfseq <- download(credentials=credentials,list_of_accession_ids=df$accession_id[1])
Selecting entries...
Compressing data. Please wait...
Data ready.
Downloading...
tar.exe: Removing leading '/' from member names
> dfseq$strain
[1] "hCoV-19/NewCaledonie/IPP03868/2022"

The text was updated successfully, but these errors were encountered:

Wytamma added bug GISAID labels

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