-
-
Notifications
You must be signed in to change notification settings - Fork 280
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
MSA problem in R Studio #94
Comments
im good. i just needed an aligned file. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Hi! I'm working for my midterms and I need answers ASAP
I downloaded sequences from NCBI (Complete Record > Fasta) and I installed necessary packages. By the time I reached using msa, the error appears. I don't know what to do anymore. Help! This is the codes by the way.
AlignNeeded = TRUE # The program reads fasta file and aligns it
if (AlignNeeded) {
file <- readDNAStringSet(fname)#for reading multiple DNA sequences from msa package
file
}
cb<- msa(file) # multiple sequence alignment from msa package
cb # aligned the 120 sequences in the file
use default substitution matrix
Error in convertAlnRows(result$msa, type) : There is an invalid aln file!
AFTER READING A SOLUTION HERE, I TRIED IT OUT, HERE'S THE PROBLEM
PLEASE HELP ME
The text was updated successfully, but these errors were encountered: